Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_F24
         (560 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   3.7  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   4.9  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   6.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   6.4  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 371 TEDRIQ*IIAARRPVS*PVPTITA 442
           T  + Q ++A+  P   PVPT+T+
Sbjct: 167 TYHQFQTVVASMDPPEPPVPTVTS 190


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +1

Query: 91  CFHAINKNACHHGALTGQFCP 153
           C +  + N C  G L G  CP
Sbjct: 185 CIYVQSINLCMAGRLFGYLCP 205


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -2

Query: 82  CANVWLLETHLKSQ**HEKNKIHVY 8
           C  +W+L+T +  +    + KIHV+
Sbjct: 131 CGRLWILDTGILGEKQICRPKIHVF 155


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 432 VGTG*LTGRRAAIIYCIRSSVQRSGTF 352
           + +G L  RRAA+IY I  S  R+  +
Sbjct: 603 IQSGKLGTRRAAVIYGIPRSTLRNKVY 629


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,960
Number of Sequences: 438
Number of extensions: 3606
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)