Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_F23
         (429 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0915 + 28755584-28756139,28756695-28756846,28756994-287569...    29   1.2  
12_01_0471 - 3672309-3672740,3673159-3673251,3673271-3673399,367...    27   4.9  

>03_05_0915 +
           28755584-28756139,28756695-28756846,28756994-28756996,
           28757587-28757690,28758033-28758121,28758682-28758825,
           28759194-28759291,28759380-28759502,28760045-28760113,
           28760206-28760406
          Length = 512

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -1

Query: 132 KQLIHNIIYYTIVINYHPQSYLRNVL 55
           K+ +HN++YY I+  +H  S+L  VL
Sbjct: 340 KENLHNLVYYDIIERFHITSFLLFVL 365


>12_01_0471 -
           3672309-3672740,3673159-3673251,3673271-3673399,
           3673400-3673448,3674291-3674378,3674477-3674573,
           3675195-3675278,3675377-3675464,3676589-3676715,
           3676774-3676848,3676934-3677042,3677125-3677448,
           3677863-3678039
          Length = 623

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 196 ICRCTNCLSVNF*TKLFI*SHDDENIYIYE 285
           I RCT+   V     +F+ SH D N+Y+Y+
Sbjct: 270 IRRCTSVAWVPEREGIFVVSHSDGNLYVYD 299


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,385,814
Number of Sequences: 37544
Number of extensions: 96996
Number of successful extensions: 116
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)