Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_F23
         (429 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026213-5|AAB71306.1|  125|Caenorhabditis elegans Saposin-like ...    28   3.3  
Z81016-5|CAB02665.3|  640|Caenorhabditis elegans Hypothetical pr...    26   10.0 

>AF026213-5|AAB71306.1|  125|Caenorhabditis elegans Saposin-like
           protein family protein13 protein.
          Length = 125

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 184 KSFLICRCTNCLS-VNF*TKLFI*SHDDENIYIYEMIHLCFSIFSYNMK 327
           +S L C CT C   VNF T++ I +H  E   + E +  C+ IF  + K
Sbjct: 46  RSRLGCTCTTCKEIVNF-TRMLILNHVPEEQEVMEKV--CYRIFGDDKK 91


>Z81016-5|CAB02665.3|  640|Caenorhabditis elegans Hypothetical
           protein F21G4.1 protein.
          Length = 640

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -1

Query: 132 KQLIHNIIYYTIVINYHPQSYLRNVLQTY 46
           K+LI N +Y T+VI +   SYL    QTY
Sbjct: 307 KKLITNKVYITMVIAWMFGSYLIGGYQTY 335


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,457,598
Number of Sequences: 27780
Number of extensions: 115756
Number of successful extensions: 198
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)