Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_F22
(465 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 96 3e-21
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 53 2e-08
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 47 2e-06
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 39 4e-04
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 27 1.1
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 1.1
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 1.1
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 27 1.4
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos... 26 2.5
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch... 26 2.5
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 26 3.3
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 26 3.3
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo... 25 5.7
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 25 7.5
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom... 24 9.9
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 95.9 bits (228), Expect = 3e-21
Identities = 49/124 (39%), Positives = 61/124 (49%), Gaps = 13/124 (10%)
Frame = +3
Query: 132 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKE--EADRCYRCNG 305
CY C GH ARECT+G + C+ CN+TGH A +C E + CY C
Sbjct: 19 CYNCGENGHQARECTKGSI-------------CYNCNQTGHKASECTEPQQEKTCYACGT 65
Query: 306 TGHIARECAQSPDE---PSCYNCNKTGHIARNC-----PEGGR---DNSNQTCYNCNKSG 452
GH+ R+C SP+ CY C + GHIAR+C GGR SN CY C G
Sbjct: 66 AGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYG 125
Query: 453 HISR 464
H +R
Sbjct: 126 HQAR 129
Score = 91.9 bits (218), Expect = 4e-20
Identities = 41/89 (46%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Frame = +3
Query: 132 CYKCNRTGHFAREC-TQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGT 308
CYKC R GH AR+C T G G +R C+ C GH ARDC +CY C
Sbjct: 85 CYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGV-KCYSCGKI 143
Query: 309 GHIARECAQSPDEPSCYNCNKTGHIARNC 395
GH + EC Q+ D CY CN+ GHIA NC
Sbjct: 144 GHRSFECQQASDGQLCYKCNQPGHIAVNC 172
Score = 89.4 bits (212), Expect = 2e-19
Identities = 34/84 (40%), Positives = 44/84 (52%)
Frame = +3
Query: 213 RQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARN 392
R +C+ C GH AR+C + CY CN TGH A EC + E +CY C GH+ R+
Sbjct: 14 RPGPRCYNCGENGHQARECTK-GSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRD 72
Query: 393 CPEGGRDNSNQTCYNCNKSGHISR 464
CP CY C + GHI+R
Sbjct: 73 CPSSPNPRQGAECYKCGRVGHIAR 96
Score = 88.2 bits (209), Expect = 5e-19
Identities = 51/140 (36%), Positives = 66/140 (47%), Gaps = 28/140 (20%)
Frame = +3
Query: 126 SVCYKCNRTGHFARECTQ----------GGVG--ARDAGFN---RQREKCFKCNRTGHFA 260
S+CY CN+TGH A ECT+ G G RD + RQ +C+KC R GH A
Sbjct: 36 SICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIA 95
Query: 261 RDCKEEADR-------------CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPE 401
RDC+ + CY C GH AR+C CY+C K GH + C +
Sbjct: 96 RDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGV---KCYSCGKIGHRSFECQQ 152
Query: 402 GGRDNSNQTCYNCNKSGHIS 461
+ Q CY CN+ GHI+
Sbjct: 153 A---SDGQLCYKCNQPGHIA 169
Score = 54.8 bits (126), Expect = 6e-09
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Frame = +3
Query: 120 SSSVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEAD--RCY 293
S+ CY C GH AR+CT G KC+ C + GH + +C++ +D CY
Sbjct: 114 SNMNCYACGSYGHQARDCTMG-------------VKCYSCGKIGHRSFECQQASDGQLCY 160
Query: 294 RCNGTGHIAREC 329
+CN GHIA C
Sbjct: 161 KCNQPGHIAVNC 172
Score = 30.7 bits (66), Expect = 0.11
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3
Query: 129 VCYKCNRTGHFARECT 176
+CYKCN+ GH A CT
Sbjct: 158 LCYKCNQPGHIAVNCT 173
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 53.2 bits (122), Expect = 2e-08
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Frame = +3
Query: 213 RQREK-CFKCNRTGHFARDCKEEADR---CYRCNGTGHIARECA-QSPDE-PSCYNCNKT 374
R R+K CF C + GH +DC E D C+RC H C+ + P + C+ C++
Sbjct: 73 RNRDKFCFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKGPLKFAKCFICHEN 132
Query: 375 GHIARNCPEG--GRDNSNQTCYNCNKSGHISR 464
GH++ C + G C C+ H+++
Sbjct: 133 GHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAK 164
Score = 49.6 bits (113), Expect = 2e-07
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 9/104 (8%)
Frame = +3
Query: 132 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEAD----RCYRC 299
C+ C + GH ++C + A+D CF+C H C ++ +C+ C
Sbjct: 79 CFACRQQGHIVQDCPE----AKD-----NVSICFRCGSKEHSLNACSKKGPLKFAKCFIC 129
Query: 300 NGTGHIARECAQSPD--EPS---CYNCNKTGHIARNCPEGGRDN 416
+ GH++ +C Q+P P C C+ H+A++C + +D+
Sbjct: 130 HENGHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDCDQVNKDD 173
Score = 37.5 bits (83), Expect = 0.001
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Frame = +3
Query: 111 SKMSSSVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKE----- 275
+K + S+C++C H C++ G + KCF C+ GH + C++
Sbjct: 95 AKDNVSICFRCGSKEHSLNACSKKG--------PLKFAKCFICHENGHLSGQCEQNPKGL 146
Query: 276 --EADRCYRCNGTGHIARECAQ 335
+ C C+ H+A++C Q
Sbjct: 147 YPKGGCCKFCSSVHHLAKDCDQ 168
Score = 35.5 bits (78), Expect = 0.004
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 321 RECAQSPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGH 455
R Q + C+ C + GHI ++CPE +DN + C+ C H
Sbjct: 68 RRINQRNRDKFCFACRQQGHIVQDCPE-AKDNVS-ICFRCGSKEH 110
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 46.8 bits (106), Expect = 2e-06
Identities = 26/79 (32%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
Frame = +3
Query: 228 CFKCNRTGHFARDCKEEADRCYRCNGTG-HIARECAQSPDEPSCYNCNKTGHIARNCPEG 404
C C GH ++DC C C HI+ C P C NC GHIA C E
Sbjct: 89 CHNCKGNGHISKDCPHVL--CTTCGAIDDHISVRC---PWTKKCMNCGLLGHIAARCSE- 142
Query: 405 GRDNSNQTCYNCNKSGHIS 461
R + C C+ H S
Sbjct: 143 PRKRGPRVCRTCHTDTHTS 161
Score = 38.7 bits (86), Expect = 4e-04
Identities = 33/132 (25%), Positives = 45/132 (34%), Gaps = 26/132 (19%)
Frame = +3
Query: 123 SSVCYKCNRTGHFARECTQ---GGVGARDAGFNRQ---REKCFKCNRTGHFARDCKEEAD 284
S VC+ C GH +++C GA D + + +KC C GH A C E
Sbjct: 86 SIVCHNCKGNGHISKDCPHVLCTTCGAIDDHISVRCPWTKKCMNCGLLGHIAARCSEPRK 145
Query: 285 R----CYRCNGTGHIARECA----------------QSPDEPSCYNCNKTGHIARNCPEG 404
R C C+ H + C S CYNC H +C
Sbjct: 146 RGPRVCRTCHTDTHTSSTCPLIWRYYVEKEHPVRIDVSEVRKFCYNCASDEHFGDDCTLP 205
Query: 405 GRDNSNQTCYNC 440
R N ++ C
Sbjct: 206 SRSNYPESTAFC 217
Score = 24.6 bits (51), Expect = 7.5
Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = +3
Query: 405 GRDNSNQ-TCYNCNKSGHISR 464
G D S C+NC +GHIS+
Sbjct: 80 GSDPSESIVCHNCKGNGHISK 100
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 38.7 bits (86), Expect = 4e-04
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +3
Query: 354 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISR 464
C NC GH +CPE N C +C GHI+R
Sbjct: 311 CQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIAR 347
Score = 36.7 bits (81), Expect = 0.002
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Frame = +3
Query: 216 QREKCFKCNRTGHFARDCKEEADR-----CYRCNGTGHIARECAQSPDEP 350
+ + C C GH DC E + C C GHIAR+C +P
Sbjct: 307 ENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCPVRDQQP 356
Score = 35.5 bits (78), Expect = 0.004
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Frame = +3
Query: 273 EEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCP 398
+E C C GH +C + + C +C GHIAR+CP
Sbjct: 306 DENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCP 350
Score = 27.5 bits (58), Expect = 1.1
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 408 RDNSNQTCYNCNKSGH 455
RD+ NQ C NC GH
Sbjct: 304 RDDENQVCQNCGNVGH 319
Score = 26.2 bits (55), Expect = 2.5
Identities = 14/49 (28%), Positives = 18/49 (36%)
Frame = +3
Query: 123 SSVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDC 269
+ VC C GH +C + + C C GH ARDC
Sbjct: 308 NQVCQNCGNVGHRRFDCP-------ERINHTMNIVCRHCGSIGHIARDC 349
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 1.1
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +3
Query: 210 NRQREKCFKCNRTGHFARDCKEEA 281
+RQ KC +C RT + +++C+ +A
Sbjct: 492 SRQFAKCRRCRRTKYCSKECQHQA 515
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.5 bits (58), Expect = 1.1
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 126 SVCYKCNRTGHFAREC 173
S CYKC + H REC
Sbjct: 1804 STCYKCGKADHNLREC 1819
Score = 27.1 bits (57), Expect = 1.4
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = +3
Query: 252 HFARDCKEEADRCYRCNGTGHIAREC 329
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 25.0 bits (52), Expect = 5.7
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +3
Query: 228 CFKCNRTGHFARDCK 272
C+KC + H R+CK
Sbjct: 1806 CYKCGKADHNLRECK 1820
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.5 bits (58), Expect = 1.1
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 126 SVCYKCNRTGHFAREC 173
S CYKC + H REC
Sbjct: 1804 STCYKCGKADHNLREC 1819
Score = 27.1 bits (57), Expect = 1.4
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = +3
Query: 252 HFARDCKEEADRCYRCNGTGHIAREC 329
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 25.0 bits (52), Expect = 5.7
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +3
Query: 228 CFKCNRTGHFARDCK 272
C+KC + H R+CK
Sbjct: 1806 CYKCGKADHNLRECK 1820
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 27.1 bits (57), Expect = 1.4
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Frame = +3
Query: 321 RECAQSPDEPS-----CYNCNKTGHIARNCPEGGRDN 416
R A PD+P CY C + GH + CP N
Sbjct: 169 RIAASVPDKPPPPGYICYRCGQKGHWIQACPTNADPN 205
Score = 26.6 bits (56), Expect = 1.9
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Frame = +3
Query: 228 CFKCNRTGHFARDCKEEADRCY----RCNGTGHIARECAQSPDEPS 353
C++C + GH+ + C AD Y R T I R ++ + P+
Sbjct: 185 CYRCGQKGHWIQACPTNADPNYDGKPRVKRTTGIPRSFLKNVERPA 230
Score = 25.4 bits (53), Expect = 4.3
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = +3
Query: 129 VCYKCNRTGHFAREC 173
+CY+C + GH+ + C
Sbjct: 184 ICYRCGQKGHWIQAC 198
>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 449
Score = 26.2 bits (55), Expect = 2.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 147 CCTCSIRLNSFSIRCITC 94
C TC R+N SIRC++C
Sbjct: 38 CSTCK-RINKRSIRCLSC 54
>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 333
Score = 26.2 bits (55), Expect = 2.5
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Frame = +3
Query: 342 DEPSCYNCNKTGHIARNCPEGGRDN----SNQTCYNCNKSGHISR 464
++P C C H+ N P + N Y CN GH R
Sbjct: 101 NQPPCEKCGGETHMTGNGPPNEEEKWNGVRNVELYQCNVCGHNQR 145
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.8 bits (54), Expect = 3.3
Identities = 9/24 (37%), Positives = 11/24 (45%)
Frame = -1
Query: 309 PCHYICSNGQPPPCSRAQSARCGC 238
PC +C G PPC+ C C
Sbjct: 293 PCPLLCHPGPCPPCTATVEKFCLC 316
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 25.8 bits (54), Expect = 3.3
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +3
Query: 333 QSPDEPSCYNCNKTGHIARN--CPEGGR 410
+ P C NC + GH+ N CP GR
Sbjct: 940 RKPTTRKCSNCGQVGHMKTNKICPLFGR 967
>SPAPB17E12.10c |||SAM-dependent
methyltransferase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 301
Score = 25.0 bits (52), Expect = 5.7
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +3
Query: 207 FNRQREKCFKCNRTGHFARDCKEEADRCYRCNG 305
F CFKC + F K+E Y C+G
Sbjct: 257 FAEDLSMCFKCVKKIQFKTKIKDELYAVYFCSG 289
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 24.6 bits (51), Expect = 7.5
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -3
Query: 250 PVRLHLKHFSRCRLKPASRAPTPPCVHS 167
PVR ++ R +LKP+ AP PP +++
Sbjct: 29 PVRYEVEDDLR-KLKPSRTAPKPPAINT 55
>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 24.2 bits (50), Expect = 9.9
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3
Query: 402 GGRDNSNQTCYNCNKSG 452
GG++ S ++C +CN SG
Sbjct: 144 GGKEGSVKSCASCNGSG 160
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,396,883
Number of Sequences: 5004
Number of extensions: 24691
Number of successful extensions: 142
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -