Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_F22
(465 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical ... 95 2e-20
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 66 1e-11
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 66 1e-11
U80837-3|AAB37904.2| 384|Caenorhabditis elegans Hypothetical pr... 62 3e-10
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 59 1e-09
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 59 1e-09
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 59 1e-09
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 59 1e-09
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 59 1e-09
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 59 1e-09
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 41 4e-04
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 41 4e-04
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 41 4e-04
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 38 0.003
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 38 0.003
AC006672-5|AAM98003.1| 42|Caenorhabditis elegans Hypothetical ... 37 0.006
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat... 36 0.011
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 36 0.014
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 36 0.014
Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical pr... 35 0.025
Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical pr... 35 0.025
U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein. 35 0.025
U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein. 35 0.025
AF016670-8|AAB66101.1| 783|Caenorhabditis elegans Hypothetical ... 35 0.033
Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical pr... 34 0.044
AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical ... 33 0.13
U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical pr... 32 0.18
AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical ... 30 0.94
Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical pr... 29 1.2
Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical pr... 29 1.2
AL132952-16|CAC70119.1| 107|Caenorhabditis elegans Hypothetical... 29 1.2
U20861-8|AAA62297.3| 372|Caenorhabditis elegans Hypothetical pr... 29 1.6
AF100656-7|AAF99964.2| 615|Caenorhabditis elegans Hypothetical ... 29 1.6
Z54236-5|CAA90980.1| 386|Caenorhabditis elegans Hypothetical pr... 28 2.9
AL031630-5|CAA20985.1| 915|Caenorhabditis elegans Hypothetical ... 28 3.8
Z54281-2|CAA91045.3| 399|Caenorhabditis elegans Hypothetical pr... 27 5.0
AL132895-2|CAC14404.1| 613|Caenorhabditis elegans Hypothetical ... 27 5.0
U80955-3|AAM97944.1| 95|Caenorhabditis elegans Mlp/crp family ... 27 6.6
U80955-1|AAM97945.1| 113|Caenorhabditis elegans Mlp/crp family ... 27 6.6
Z81546-10|CAH10812.1| 674|Caenorhabditis elegans Hypothetical p... 27 8.8
Z81546-9|CAD45596.2| 782|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z81546-8|CAB04456.1| 676|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z81491-10|CAB04023.3| 282|Caenorhabditis elegans Hypothetical p... 27 8.8
U28741-4|AAA68328.1| 747|Caenorhabditis elegans Hypothetical pr... 27 8.8
AY313179-1|AAP79304.1| 782|Caenorhabditis elegans myotubularin-... 27 8.8
AY313177-1|AAP79302.1| 676|Caenorhabditis elegans myotubularin-... 27 8.8
AL021448-1|CAA16276.2| 898|Caenorhabditis elegans Hypothetical ... 27 8.8
AF233290-1|AAF62516.1| 898|Caenorhabditis elegans maternal-effe... 27 8.8
AC024809-9|AAO12399.1| 700|Caenorhabditis elegans Hypothetical ... 27 8.8
AC024809-8|AAF59546.2| 741|Caenorhabditis elegans Hypothetical ... 27 8.8
>AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical
protein K08D12.3a protein.
Length = 151
Score = 95.5 bits (227), Expect = 2e-20
Identities = 44/113 (38%), Positives = 57/113 (50%)
Frame = +3
Query: 126 SVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNG 305
S CY C TGHF+R+C +GG G G C+ C GH++RDC G
Sbjct: 35 STCYNCQETGHFSRDCPKGGSGGGQRGGGGGGGSCYNCGGRGHYSRDCPSARSE-GGSGG 93
Query: 306 TGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISR 464
G E +S CYNC ++GHI+R C E G + CY C ++GHISR
Sbjct: 94 YGGRGGE-GRSFGGQKCYNCGRSGHISRECTESG-SAEEKRCYQCQETGHISR 144
Score = 69.7 bits (163), Expect = 9e-13
Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 12/78 (15%)
Frame = +3
Query: 132 CYKCNRTGHFARECTQ-------GGVGARDA-GFNRQREKCFKCNRTGHFARDCKE---- 275
CY C GH++R+C GG G R G + +KC+ C R+GH +R+C E
Sbjct: 69 CYNCGGRGHYSRDCPSARSEGGSGGYGGRGGEGRSFGGQKCYNCGRSGHISRECTESGSA 128
Query: 276 EADRCYRCNGTGHIAREC 329
E RCY+C TGHI+R+C
Sbjct: 129 EEKRCYQCQETGHISRDC 146
Score = 53.2 bits (122), Expect = 9e-08
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 6/44 (13%)
Frame = +3
Query: 351 SCYNCNKTGHIARNCPEGGRDNSNQ------TCYNCNKSGHISR 464
+CY C + GHI+RNCP G D + TCYNC ++GH SR
Sbjct: 5 NCYKCQQPGHISRNCPNGESDGGRRGGGGGSTCYNCQETGHFSR 48
Score = 53.2 bits (122), Expect = 9e-08
Identities = 19/51 (37%), Positives = 31/51 (60%)
Frame = +3
Query: 132 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEAD 284
CY C R+GH +RECT+ G + + ++C++C TGH +RDC + +
Sbjct: 109 CYNCGRSGHISRECTESG--------SAEEKRCYQCQETGHISRDCPSQTN 151
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 66.1 bits (154), Expect = 1e-11
Identities = 38/114 (33%), Positives = 50/114 (43%), Gaps = 6/114 (5%)
Frame = +3
Query: 132 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKE---EADRCYRCN 302
C+ C GH ++EC + V R C C + GHFA DC + C C
Sbjct: 572 CHNCGEEGHISKECDKPKV---------PRFPCRNCEQLGHFASDCDQPRVPRGPCRNCG 622
Query: 303 GTGHIARECAQSPDEP--SCYNCNKTGHIARNCP-EGGRDNSNQTCYNCNKSGH 455
GH A +C Q P P C NC + GH A++C E R + C C + GH
Sbjct: 623 IEGHFAVDCDQ-PKVPRGPCRNCGQEGHFAKDCQNERVRMEPTEPCRRCAEEGH 675
Score = 56.8 bits (131), Expect = 7e-09
Identities = 35/102 (34%), Positives = 41/102 (40%), Gaps = 8/102 (7%)
Frame = +3
Query: 132 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDC---KEEADRCYRCN 302
C C + GHFA +C Q V R C C GHFA DC K C C
Sbjct: 595 CRNCEQLGHFASDCDQPRV---------PRGPCRNCGIEGHFAVDCDQPKVPRGPCRNCG 645
Query: 303 GTGHIARECAQS-----PDEPSCYNCNKTGHIARNCPEGGRD 413
GH A++C P EP C C + GH CP +D
Sbjct: 646 QEGHFAKDCQNERVRMEPTEP-CRRCAEEGHWGYECPTRPKD 686
Score = 45.2 bits (102), Expect = 2e-05
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +3
Query: 240 NRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP--SCYNCNKTGHIARNCPEGGRD 413
N+ G++ D E C+ C GHI++EC P P C NC + GH A +C +
Sbjct: 558 NQRGNW--DGGERPRGCHNCGEEGHISKEC-DKPKVPRFPCRNCEQLGHFASDCDQPRVP 614
Query: 414 NSNQTCYNCNKSGHIS 461
C NC GH +
Sbjct: 615 RG--PCRNCGIEGHFA 628
Score = 32.7 bits (71), Expect = 0.13
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = +3
Query: 114 KMSSSVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDC 269
K+ C C + GHFA++C V E C +C GH+ +C
Sbjct: 635 KVPRGPCRNCGQEGHFAKDCQNERVRMEPT------EPCRRCAEEGHWGYEC 680
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 66.1 bits (154), Expect = 1e-11
Identities = 38/114 (33%), Positives = 50/114 (43%), Gaps = 6/114 (5%)
Frame = +3
Query: 132 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKE---EADRCYRCN 302
C+ C GH ++EC + V R C C + GHFA DC + C C
Sbjct: 572 CHNCGEEGHISKECDKPKV---------PRFPCRNCEQLGHFASDCDQPRVPRGPCRNCG 622
Query: 303 GTGHIARECAQSPDEP--SCYNCNKTGHIARNCP-EGGRDNSNQTCYNCNKSGH 455
GH A +C Q P P C NC + GH A++C E R + C C + GH
Sbjct: 623 IEGHFAVDCDQ-PKVPRGPCRNCGQEGHFAKDCQNERVRMEPTEPCRRCAEEGH 675
Score = 56.8 bits (131), Expect = 7e-09
Identities = 35/102 (34%), Positives = 41/102 (40%), Gaps = 8/102 (7%)
Frame = +3
Query: 132 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDC---KEEADRCYRCN 302
C C + GHFA +C Q V R C C GHFA DC K C C
Sbjct: 595 CRNCEQLGHFASDCDQPRV---------PRGPCRNCGIEGHFAVDCDQPKVPRGPCRNCG 645
Query: 303 GTGHIARECAQS-----PDEPSCYNCNKTGHIARNCPEGGRD 413
GH A++C P EP C C + GH CP +D
Sbjct: 646 QEGHFAKDCQNERVRMEPTEP-CRRCAEEGHWGYECPTRPKD 686
Score = 45.2 bits (102), Expect = 2e-05
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +3
Query: 240 NRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP--SCYNCNKTGHIARNCPEGGRD 413
N+ G++ D E C+ C GHI++EC P P C NC + GH A +C +
Sbjct: 558 NQRGNW--DGGERPRGCHNCGEEGHISKEC-DKPKVPRFPCRNCEQLGHFASDCDQPRVP 614
Query: 414 NSNQTCYNCNKSGHIS 461
C NC GH +
Sbjct: 615 RG--PCRNCGIEGHFA 628
Score = 32.7 bits (71), Expect = 0.13
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = +3
Query: 114 KMSSSVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDC 269
K+ C C + GHFA++C V E C +C GH+ +C
Sbjct: 635 KVPRGPCRNCGQEGHFAKDCQNERVRMEPT------EPCRRCAEEGHWGYEC 680
>U80837-3|AAB37904.2| 384|Caenorhabditis elegans Hypothetical
protein F07E5.5 protein.
Length = 384
Score = 61.7 bits (143), Expect = 3e-10
Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 11/107 (10%)
Frame = +3
Query: 114 KMSSSVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADR-- 287
K++ S C+ C GH +C + + D CFKC H +CK++ +
Sbjct: 225 KITGSACFHCREPGHRLADCPKRNSSSSDG-------VCFKCGSMEHSIHECKKKGVKGF 277
Query: 288 ----CYRCNGTGHIARECAQS-----PDEPSCYNCNKTGHIARNCPE 401
C+ C GHI+R+C Q+ PD C C H+ R+CPE
Sbjct: 278 PYATCFVCKQVGHISRDCHQNVNGVYPDGGCCNVCGANTHLRRDCPE 324
Score = 45.6 bits (103), Expect = 2e-05
Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 4/99 (4%)
Frame = +3
Query: 180 GGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQ---SPDEP 350
G V DA +R K + R G +D K C+ C GH +C + S +
Sbjct: 197 GKVTVADAMLLVKRWKTRETRRIGR--QDQKITGSACFHCREPGHRLADCPKRNSSSSDG 254
Query: 351 SCYNCNKTGHIARNCPEGG-RDNSNQTCYNCNKSGHISR 464
C+ C H C + G + TC+ C + GHISR
Sbjct: 255 VCFKCGSMEHSIHECKKKGVKGFPYATCFVCKQVGHISR 293
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 59.3 bits (137), Expect = 1e-09
Identities = 35/100 (35%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Frame = +3
Query: 129 VCYKCNRTGHFARECTQ---------GGVGARDAGF-NRQREKCFKCNRTGHFARDCKEE 278
VCY C + GH +RECT+ GG G AGF N F G F +
Sbjct: 184 VCYNCQQPGHTSRECTEERKPREGRTGGFGG-GAGFGNNGGNDGF--GGDGGFGGGEERG 240
Query: 279 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 398
+C+ C G GH + EC + P C+NC + GH + CP
Sbjct: 241 PMKCFNCKGEGHRSAECPEPP--RGCFNCGEQGHRSNECP 278
Score = 49.6 bits (113), Expect = 1e-06
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +3
Query: 351 SCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISR 464
+C+NC + GH + +CPE ++ + CYNC + GH SR
Sbjct: 159 NCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSR 196
Score = 46.8 bits (106), Expect = 8e-06
Identities = 33/110 (30%), Positives = 40/110 (36%), Gaps = 17/110 (15%)
Frame = +3
Query: 183 GVGARDAGFNRQREKCFKCNRTGHFARDC----KEEADR-CYRCNGTGHIARECAQ--SP 341
G G G + CF C + GH + DC KE R CY C GH +REC + P
Sbjct: 145 GFGEGGHGGGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEERKP 204
Query: 342 DEPSC----------YNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHIS 461
E N G GG + C+NC GH S
Sbjct: 205 REGRTGGFGGGAGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRS 254
Score = 45.2 bits (102), Expect = 2e-05
Identities = 34/127 (26%), Positives = 50/127 (39%), Gaps = 17/127 (13%)
Frame = +3
Query: 132 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEAD-RCYRCNGT 308
C+ C + GH + +C + R+ C+ C + GH +R+C EE R R G
Sbjct: 160 CFNCQQPGHRSSDCPEPRK-------EREPRVCYNCQQPGHTSRECTEERKPREGRTGGF 212
Query: 309 GHIARECAQSPDEP----------------SCYNCNKTGHIARNCPEGGRDNSNQTCYNC 440
G A ++ C+NC GH + CPE R C+NC
Sbjct: 213 GGGAGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECPEPPRG-----CFNC 267
Query: 441 NKSGHIS 461
+ GH S
Sbjct: 268 GEQGHRS 274
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 59.3 bits (137), Expect = 1e-09
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Frame = +3
Query: 129 VCYKCNRTGHFARECTQG-----GVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCY 293
VCY C + GH +R+C + G +GF + F F + + +C+
Sbjct: 397 VCYNCQQPGHNSRDCPEERKPREGRNGFTSGFGGGNDGGFGGGNAEGFGNNEERGPMKCF 456
Query: 294 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 398
C G GH + EC + P C+NC + GH + CP
Sbjct: 457 NCKGEGHRSAECPEPP--RGCFNCGEQGHRSNECP 489
Score = 51.2 bits (117), Expect = 4e-07
Identities = 35/127 (27%), Positives = 52/127 (40%), Gaps = 15/127 (11%)
Frame = +3
Query: 129 VCYKCNRTGHFARECTQ--------GGVGARDAGFNRQRE--KCFKCNRTGHFARDCKEE 278
VCY C + GH +R+C + G +GF F T F E
Sbjct: 283 VCYNCQQPGHNSRDCPEERKPREGRNGFTGGSSGFGGGNGGGTGFDSGLTNGFGSGNNGE 342
Query: 279 A---DRCYRCNGTGHIARECAQSPDEPS--CYNCNKTGHIARNCPEGGRDNSNQTCYNCN 443
+ + N G + Q E + C+NC + GH + +CPE ++ + CYNC
Sbjct: 343 SGFGSGGFGGNSNGFGSGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQ 402
Query: 444 KSGHISR 464
+ GH SR
Sbjct: 403 QPGHNSR 409
Score = 49.2 bits (112), Expect = 1e-06
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +3
Query: 351 SCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISR 464
+C+NC + GH + +CPE ++ + CYNC + GH SR
Sbjct: 258 NCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSR 295
Score = 48.4 bits (110), Expect = 3e-06
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = +3
Query: 246 TGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPEGGRDN 416
+G +D E + C+ C GH + +C + E CYNC + GH +R+CPE +
Sbjct: 245 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKPR 304
Query: 417 SNQTCYNCNKSG 452
+ + SG
Sbjct: 305 EGRNGFTGGSSG 316
Score = 48.4 bits (110), Expect = 3e-06
Identities = 34/125 (27%), Positives = 49/125 (39%), Gaps = 15/125 (12%)
Frame = +3
Query: 132 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNG-- 305
C+ C + GH + +C + R+ C+ C + GH +RDC EE NG
Sbjct: 373 CFNCQQPGHRSNDCPEPKK-------EREPRVCYNCQQPGHNSRDCPEERKPREGRNGFT 425
Query: 306 -----------TGHIARECAQSPDE--PSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNK 446
G A + + C+NC GH + CPE R C+NC +
Sbjct: 426 SGFGGGNDGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPPRG-----CFNCGE 480
Query: 447 SGHIS 461
GH S
Sbjct: 481 QGHRS 485
Score = 48.0 bits (109), Expect = 3e-06
Identities = 34/108 (31%), Positives = 45/108 (41%), Gaps = 15/108 (13%)
Frame = +3
Query: 183 GVGARDAGFNRQREKCFKCNRTGHFARDC----KEEADR-CYRCNGTGHIARECAQ--SP 341
G G +D G + CF C + GH + DC KE R CY C GH +R+C + P
Sbjct: 360 GGGGQDRG--ERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKP 417
Query: 342 DE-----PSCYNCNKTGHIARNCPEGGRDNSNQ---TCYNCNKSGHIS 461
E S + G EG +N + C+NC GH S
Sbjct: 418 REGRNGFTSGFGGGNDGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRS 465
Score = 46.4 bits (105), Expect = 1e-05
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +3
Query: 246 TGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPE 401
+G +D E + C+ C GH + +C + E CYNC + GH +R+CPE
Sbjct: 359 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 413
Score = 42.7 bits (96), Expect = 1e-04
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +3
Query: 183 GVGARDAGFNRQREKCFKCNRTGHFARDC----KEEADR-CYRCNGTGHIARECAQ 335
G G +D G + CF C + GH + DC KE R CY C GH +R+C +
Sbjct: 246 GGGGQDRG--ERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 299
Score = 36.7 bits (81), Expect = 0.008
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 132 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEE 278
C+ C + GH + +C + R+ C+ C + GH +RDC EE
Sbjct: 259 CFNCQQPGHRSNDCPEPKK-------EREPRVCYNCQQPGHNSRDCPEE 300
Score = 28.3 bits (60), Expect = 2.9
Identities = 19/80 (23%), Positives = 26/80 (32%)
Frame = +3
Query: 132 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 311
C+ C GH + EC + G CF C GH + +C A G G
Sbjct: 455 CFNCKGEGHRSAECPEPPRG------------CFNCGEQGHRSNECPNPAKPREGAEGEG 502
Query: 312 HIARECAQSPDEPSCYNCNK 371
A + +N K
Sbjct: 503 PKATYVPVEDNMEEVFNMQK 522
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 59.3 bits (137), Expect = 1e-09
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Frame = +3
Query: 129 VCYKCNRTGHFARECTQG-----GVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCY 293
VCY C + GH +R+C + G +GF + F F + + +C+
Sbjct: 397 VCYNCQQPGHNSRDCPEERKPREGRNGFTSGFGGGNDGGFGGGNAEGFGNNEERGPMKCF 456
Query: 294 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 398
C G GH + EC + P C+NC + GH + CP
Sbjct: 457 NCKGEGHRSAECPEPP--RGCFNCGEQGHRSNECP 489
Score = 51.2 bits (117), Expect = 4e-07
Identities = 35/127 (27%), Positives = 52/127 (40%), Gaps = 15/127 (11%)
Frame = +3
Query: 129 VCYKCNRTGHFARECTQ--------GGVGARDAGFNRQRE--KCFKCNRTGHFARDCKEE 278
VCY C + GH +R+C + G +GF F T F E
Sbjct: 283 VCYNCQQPGHNSRDCPEERKPREGRNGFTGGSSGFGGGNGGGTGFDSGLTNGFGSGNNGE 342
Query: 279 A---DRCYRCNGTGHIARECAQSPDEPS--CYNCNKTGHIARNCPEGGRDNSNQTCYNCN 443
+ + N G + Q E + C+NC + GH + +CPE ++ + CYNC
Sbjct: 343 SGFGSGGFGGNSNGFGSGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQ 402
Query: 444 KSGHISR 464
+ GH SR
Sbjct: 403 QPGHNSR 409
Score = 49.2 bits (112), Expect = 1e-06
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +3
Query: 351 SCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISR 464
+C+NC + GH + +CPE ++ + CYNC + GH SR
Sbjct: 258 NCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSR 295
Score = 48.4 bits (110), Expect = 3e-06
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = +3
Query: 246 TGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPEGGRDN 416
+G +D E + C+ C GH + +C + E CYNC + GH +R+CPE +
Sbjct: 245 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKPR 304
Query: 417 SNQTCYNCNKSG 452
+ + SG
Sbjct: 305 EGRNGFTGGSSG 316
Score = 48.4 bits (110), Expect = 3e-06
Identities = 34/125 (27%), Positives = 49/125 (39%), Gaps = 15/125 (12%)
Frame = +3
Query: 132 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNG-- 305
C+ C + GH + +C + R+ C+ C + GH +RDC EE NG
Sbjct: 373 CFNCQQPGHRSNDCPEPKK-------EREPRVCYNCQQPGHNSRDCPEERKPREGRNGFT 425
Query: 306 -----------TGHIARECAQSPDE--PSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNK 446
G A + + C+NC GH + CPE R C+NC +
Sbjct: 426 SGFGGGNDGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPPRG-----CFNCGE 480
Query: 447 SGHIS 461
GH S
Sbjct: 481 QGHRS 485
Score = 48.0 bits (109), Expect = 3e-06
Identities = 34/108 (31%), Positives = 45/108 (41%), Gaps = 15/108 (13%)
Frame = +3
Query: 183 GVGARDAGFNRQREKCFKCNRTGHFARDC----KEEADR-CYRCNGTGHIARECAQ--SP 341
G G +D G + CF C + GH + DC KE R CY C GH +R+C + P
Sbjct: 360 GGGGQDRG--ERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKP 417
Query: 342 DE-----PSCYNCNKTGHIARNCPEGGRDNSNQ---TCYNCNKSGHIS 461
E S + G EG +N + C+NC GH S
Sbjct: 418 REGRNGFTSGFGGGNDGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRS 465
Score = 46.4 bits (105), Expect = 1e-05
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +3
Query: 246 TGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPE 401
+G +D E + C+ C GH + +C + E CYNC + GH +R+CPE
Sbjct: 359 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 413
Score = 42.7 bits (96), Expect = 1e-04
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +3
Query: 183 GVGARDAGFNRQREKCFKCNRTGHFARDC----KEEADR-CYRCNGTGHIARECAQ 335
G G +D G + CF C + GH + DC KE R CY C GH +R+C +
Sbjct: 246 GGGGQDRG--ERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 299
Score = 36.7 bits (81), Expect = 0.008
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 132 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEE 278
C+ C + GH + +C + R+ C+ C + GH +RDC EE
Sbjct: 259 CFNCQQPGHRSNDCPEPKK-------EREPRVCYNCQQPGHNSRDCPEE 300
Score = 28.3 bits (60), Expect = 2.9
Identities = 19/80 (23%), Positives = 26/80 (32%)
Frame = +3
Query: 132 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 311
C+ C GH + EC + G CF C GH + +C A G G
Sbjct: 455 CFNCKGEGHRSAECPEPPRG------------CFNCGEQGHRSNECPNPAKPREGAEGEG 502
Query: 312 HIARECAQSPDEPSCYNCNK 371
A + +N K
Sbjct: 503 PKATYVPVEDNMEEVFNMQK 522
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 59.3 bits (137), Expect = 1e-09
Identities = 35/100 (35%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Frame = +3
Query: 129 VCYKCNRTGHFARECTQ---------GGVGARDAGF-NRQREKCFKCNRTGHFARDCKEE 278
VCY C + GH +RECT+ GG G AGF N F G F +
Sbjct: 184 VCYNCQQPGHTSRECTEERKPREGRTGGFGG-GAGFGNNGGNDGF--GGDGGFGGGEERG 240
Query: 279 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 398
+C+ C G GH + EC + P C+NC + GH + CP
Sbjct: 241 PMKCFNCKGEGHRSAECPEPP--RGCFNCGEQGHRSNECP 278
Score = 49.6 bits (113), Expect = 1e-06
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +3
Query: 351 SCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISR 464
+C+NC + GH + +CPE ++ + CYNC + GH SR
Sbjct: 159 NCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSR 196
Score = 46.8 bits (106), Expect = 8e-06
Identities = 33/110 (30%), Positives = 40/110 (36%), Gaps = 17/110 (15%)
Frame = +3
Query: 183 GVGARDAGFNRQREKCFKCNRTGHFARDC----KEEADR-CYRCNGTGHIARECAQ--SP 341
G G G + CF C + GH + DC KE R CY C GH +REC + P
Sbjct: 145 GFGEGGHGGGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEERKP 204
Query: 342 DEPSC----------YNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHIS 461
E N G GG + C+NC GH S
Sbjct: 205 REGRTGGFGGGAGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRS 254
Score = 45.2 bits (102), Expect = 2e-05
Identities = 34/127 (26%), Positives = 50/127 (39%), Gaps = 17/127 (13%)
Frame = +3
Query: 132 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEAD-RCYRCNGT 308
C+ C + GH + +C + R+ C+ C + GH +R+C EE R R G
Sbjct: 160 CFNCQQPGHRSSDCPEPRK-------EREPRVCYNCQQPGHTSRECTEERKPREGRTGGF 212
Query: 309 GHIARECAQSPDEP----------------SCYNCNKTGHIARNCPEGGRDNSNQTCYNC 440
G A ++ C+NC GH + CPE R C+NC
Sbjct: 213 GGGAGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECPEPPRG-----CFNC 267
Query: 441 NKSGHIS 461
+ GH S
Sbjct: 268 GEQGHRS 274
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 59.3 bits (137), Expect = 1e-09
Identities = 35/100 (35%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Frame = +3
Query: 129 VCYKCNRTGHFARECTQ---------GGVGARDAGF-NRQREKCFKCNRTGHFARDCKEE 278
VCY C + GH +RECT+ GG G AGF N F G F +
Sbjct: 184 VCYNCQQPGHTSRECTEERKPREGRTGGFGG-GAGFGNNGGNDGF--GGDGGFGGGEERG 240
Query: 279 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 398
+C+ C G GH + EC + P C+NC + GH + CP
Sbjct: 241 PMKCFNCKGEGHRSAECPEPP--RGCFNCGEQGHRSNECP 278
Score = 49.6 bits (113), Expect = 1e-06
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +3
Query: 351 SCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISR 464
+C+NC + GH + +CPE ++ + CYNC + GH SR
Sbjct: 159 NCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSR 196
Score = 46.8 bits (106), Expect = 8e-06
Identities = 33/110 (30%), Positives = 40/110 (36%), Gaps = 17/110 (15%)
Frame = +3
Query: 183 GVGARDAGFNRQREKCFKCNRTGHFARDC----KEEADR-CYRCNGTGHIARECAQ--SP 341
G G G + CF C + GH + DC KE R CY C GH +REC + P
Sbjct: 145 GFGEGGHGGGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEERKP 204
Query: 342 DEPSC----------YNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHIS 461
E N G GG + C+NC GH S
Sbjct: 205 REGRTGGFGGGAGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRS 254
Score = 45.2 bits (102), Expect = 2e-05
Identities = 34/127 (26%), Positives = 50/127 (39%), Gaps = 17/127 (13%)
Frame = +3
Query: 132 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEAD-RCYRCNGT 308
C+ C + GH + +C + R+ C+ C + GH +R+C EE R R G
Sbjct: 160 CFNCQQPGHRSSDCPEPRK-------EREPRVCYNCQQPGHTSRECTEERKPREGRTGGF 212
Query: 309 GHIARECAQSPDEP----------------SCYNCNKTGHIARNCPEGGRDNSNQTCYNC 440
G A ++ C+NC GH + CPE R C+NC
Sbjct: 213 GGGAGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECPEPPRG-----CFNC 267
Query: 441 NKSGHIS 461
+ GH S
Sbjct: 268 GEQGHRS 274
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 59.3 bits (137), Expect = 1e-09
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Frame = +3
Query: 129 VCYKCNRTGHFARECTQG-----GVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCY 293
VCY C + GH +R+C + G +GF + F F + + +C+
Sbjct: 397 VCYNCQQPGHNSRDCPEERKPREGRNGFTSGFGGGNDGGFGGGNAEGFGNNEERGPMKCF 456
Query: 294 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 398
C G GH + EC + P C+NC + GH + CP
Sbjct: 457 NCKGEGHRSAECPEPP--RGCFNCGEQGHRSNECP 489
Score = 51.2 bits (117), Expect = 4e-07
Identities = 35/127 (27%), Positives = 52/127 (40%), Gaps = 15/127 (11%)
Frame = +3
Query: 129 VCYKCNRTGHFARECTQ--------GGVGARDAGFNRQRE--KCFKCNRTGHFARDCKEE 278
VCY C + GH +R+C + G +GF F T F E
Sbjct: 283 VCYNCQQPGHNSRDCPEERKPREGRNGFTGGSSGFGGGNGGGTGFDSGLTNGFGSGNNGE 342
Query: 279 A---DRCYRCNGTGHIARECAQSPDEPS--CYNCNKTGHIARNCPEGGRDNSNQTCYNCN 443
+ + N G + Q E + C+NC + GH + +CPE ++ + CYNC
Sbjct: 343 SGFGSGGFGGNSNGFGSGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQ 402
Query: 444 KSGHISR 464
+ GH SR
Sbjct: 403 QPGHNSR 409
Score = 49.2 bits (112), Expect = 1e-06
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +3
Query: 351 SCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISR 464
+C+NC + GH + +CPE ++ + CYNC + GH SR
Sbjct: 258 NCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSR 295
Score = 48.4 bits (110), Expect = 3e-06
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = +3
Query: 246 TGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPEGGRDN 416
+G +D E + C+ C GH + +C + E CYNC + GH +R+CPE +
Sbjct: 245 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKPR 304
Query: 417 SNQTCYNCNKSG 452
+ + SG
Sbjct: 305 EGRNGFTGGSSG 316
Score = 48.4 bits (110), Expect = 3e-06
Identities = 34/125 (27%), Positives = 49/125 (39%), Gaps = 15/125 (12%)
Frame = +3
Query: 132 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNG-- 305
C+ C + GH + +C + R+ C+ C + GH +RDC EE NG
Sbjct: 373 CFNCQQPGHRSNDCPEPKK-------EREPRVCYNCQQPGHNSRDCPEERKPREGRNGFT 425
Query: 306 -----------TGHIARECAQSPDE--PSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNK 446
G A + + C+NC GH + CPE R C+NC +
Sbjct: 426 SGFGGGNDGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPPRG-----CFNCGE 480
Query: 447 SGHIS 461
GH S
Sbjct: 481 QGHRS 485
Score = 48.0 bits (109), Expect = 3e-06
Identities = 34/108 (31%), Positives = 45/108 (41%), Gaps = 15/108 (13%)
Frame = +3
Query: 183 GVGARDAGFNRQREKCFKCNRTGHFARDC----KEEADR-CYRCNGTGHIARECAQ--SP 341
G G +D G + CF C + GH + DC KE R CY C GH +R+C + P
Sbjct: 360 GGGGQDRG--ERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKP 417
Query: 342 DE-----PSCYNCNKTGHIARNCPEGGRDNSNQ---TCYNCNKSGHIS 461
E S + G EG +N + C+NC GH S
Sbjct: 418 REGRNGFTSGFGGGNDGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRS 465
Score = 46.4 bits (105), Expect = 1e-05
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +3
Query: 246 TGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPE 401
+G +D E + C+ C GH + +C + E CYNC + GH +R+CPE
Sbjct: 359 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 413
Score = 42.7 bits (96), Expect = 1e-04
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +3
Query: 183 GVGARDAGFNRQREKCFKCNRTGHFARDC----KEEADR-CYRCNGTGHIARECAQ 335
G G +D G + CF C + GH + DC KE R CY C GH +R+C +
Sbjct: 246 GGGGQDRG--ERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 299
Score = 36.7 bits (81), Expect = 0.008
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 132 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEE 278
C+ C + GH + +C + R+ C+ C + GH +RDC EE
Sbjct: 259 CFNCQQPGHRSNDCPEPKK-------EREPRVCYNCQQPGHNSRDCPEE 300
Score = 28.3 bits (60), Expect = 2.9
Identities = 19/80 (23%), Positives = 26/80 (32%)
Frame = +3
Query: 132 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 311
C+ C GH + EC + G CF C GH + +C A G G
Sbjct: 455 CFNCKGEGHRSAECPEPPRG------------CFNCGEQGHRSNECPNPAKPREGAEGEG 502
Query: 312 HIARECAQSPDEPSCYNCNK 371
A + +N K
Sbjct: 503 PKATYVPVEDNMEEVFNMQK 522
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 41.1 bits (92), Expect = 4e-04
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = +3
Query: 222 EKCFKCNRTG-HF---ARDCKEEAD-RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIA 386
++C C + G H ++ K+ A +C C +G C + + +C+ CN+ GHIA
Sbjct: 629 DRCSDCQQRGWHMFWCSKKSKDNASQKCDECQQSGWHMASCFKLKNR-ACFRCNEMGHIA 687
Query: 387 RNCPEGGRDNSNQ 425
NCP+ + S +
Sbjct: 688 WNCPKKNENTSEK 700
Score = 33.1 bits (72), Expect = 0.10
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = +3
Query: 279 ADRCYRCNGTGHIARECAQ-SPDEPS--CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKS 449
+DRC C G C++ S D S C C ++G +C + N+ C+ CN+
Sbjct: 628 SDRCSDCQQRGWHMFWCSKKSKDNASQKCDECQQSGWHMASCFK----LKNRACFRCNEM 683
Query: 450 GHIS 461
GHI+
Sbjct: 684 GHIA 687
Score = 31.1 bits (67), Expect = 0.41
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 168 ECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEE 278
EC Q G F + CF+CN GH A +C ++
Sbjct: 658 ECQQSGWHMASC-FKLKNRACFRCNEMGHIAWNCPKK 693
Score = 30.7 bits (66), Expect = 0.54
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 333 QSPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSG 452
Q+P + C +C + G C + +DN++Q C C +SG
Sbjct: 625 QNPSD-RCSDCQQRGWHMFWCSKKSKDNASQKCDECQQSG 663
Score = 27.9 bits (59), Expect = 3.8
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +3
Query: 114 KMSSSVCYKCNRTGHFAREC 173
K+ + C++CN GH A C
Sbjct: 671 KLKNRACFRCNEMGHIAWNC 690
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 41.1 bits (92), Expect = 4e-04
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = +3
Query: 222 EKCFKCNRTG-HF---ARDCKEEAD-RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIA 386
++C C + G H ++ K+ A +C C +G C + + +C+ CN+ GHIA
Sbjct: 532 DRCSDCQQRGWHMFWCSKKSKDNASQKCDECQQSGWHMASCFKLKNR-ACFRCNEMGHIA 590
Query: 387 RNCPEGGRDNSNQ 425
NCP+ + S +
Sbjct: 591 WNCPKKNENTSEK 603
Score = 33.1 bits (72), Expect = 0.10
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = +3
Query: 279 ADRCYRCNGTGHIARECAQ-SPDEPS--CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKS 449
+DRC C G C++ S D S C C ++G +C + N+ C+ CN+
Sbjct: 531 SDRCSDCQQRGWHMFWCSKKSKDNASQKCDECQQSGWHMASCFK----LKNRACFRCNEM 586
Query: 450 GHIS 461
GHI+
Sbjct: 587 GHIA 590
Score = 31.1 bits (67), Expect = 0.41
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 168 ECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEE 278
EC Q G F + CF+CN GH A +C ++
Sbjct: 561 ECQQSGWHMASC-FKLKNRACFRCNEMGHIAWNCPKK 596
Score = 30.7 bits (66), Expect = 0.54
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 333 QSPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSG 452
Q+P + C +C + G C + +DN++Q C C +SG
Sbjct: 528 QNPSD-RCSDCQQRGWHMFWCSKKSKDNASQKCDECQQSG 566
Score = 27.9 bits (59), Expect = 3.8
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +3
Query: 114 KMSSSVCYKCNRTGHFAREC 173
K+ + C++CN GH A C
Sbjct: 574 KLKNRACFRCNEMGHIAWNC 593
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 41.1 bits (92), Expect = 4e-04
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = +3
Query: 222 EKCFKCNRTG-HF---ARDCKEEAD-RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIA 386
++C C + G H ++ K+ A +C C +G C + + +C+ CN+ GHIA
Sbjct: 543 DRCSDCQQRGWHMFWCSKKSKDNASQKCDECQQSGWHMASCFKLKNR-ACFRCNEMGHIA 601
Query: 387 RNCPEGGRDNSNQ 425
NCP+ + S +
Sbjct: 602 WNCPKKNENTSEK 614
Score = 33.1 bits (72), Expect = 0.10
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = +3
Query: 279 ADRCYRCNGTGHIARECAQ-SPDEPS--CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKS 449
+DRC C G C++ S D S C C ++G +C + N+ C+ CN+
Sbjct: 542 SDRCSDCQQRGWHMFWCSKKSKDNASQKCDECQQSGWHMASCFK----LKNRACFRCNEM 597
Query: 450 GHIS 461
GHI+
Sbjct: 598 GHIA 601
Score = 31.1 bits (67), Expect = 0.41
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 168 ECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEE 278
EC Q G F + CF+CN GH A +C ++
Sbjct: 572 ECQQSGWHMASC-FKLKNRACFRCNEMGHIAWNCPKK 607
Score = 30.7 bits (66), Expect = 0.54
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 333 QSPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSG 452
Q+P + C +C + G C + +DN++Q C C +SG
Sbjct: 539 QNPSD-RCSDCQQRGWHMFWCSKKSKDNASQKCDECQQSG 577
Score = 27.9 bits (59), Expect = 3.8
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +3
Query: 114 KMSSSVCYKCNRTGHFAREC 173
K+ + C++CN GH A C
Sbjct: 585 KLKNRACFRCNEMGHIAWNC 604
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 38.3 bits (85), Expect = 0.003
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +3
Query: 228 CFKCNRTGHFARDCKEEADRCYRCNGTGHIARECA 332
CF C + GH A +C C C H A ECA
Sbjct: 204 CFNCKKYGHRATECSAPQRECANCGDPNHRANECA 238
Score = 33.5 bits (73), Expect = 0.076
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +3
Query: 279 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 395
++ C+ C GH A EC S + C NC H A C
Sbjct: 201 SNTCFNCKKYGHRATEC--SAPQRECANCGDPNHRANEC 237
Score = 29.9 bits (64), Expect = 0.94
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +3
Query: 351 SCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGH 455
+C+NC K GH A C R+ C NC H
Sbjct: 203 TCFNCKKYGHRATECSAPQRE-----CANCGDPNH 232
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +3
Query: 123 SSVCYKCNRTGHFARECTQGGVGARDAGF-NRQREKCFKCNRTG 251
S+ C+ C + GH A EC+ + G N + +C ++ G
Sbjct: 201 SNTCFNCKKYGHRATECSAPQRECANCGDPNHRANECASWSKNG 244
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 38.3 bits (85), Expect = 0.003
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +3
Query: 228 CFKCNRTGHFARDCKEEADRCYRCNGTGHIARECA 332
CF C + GH A +C C C H A ECA
Sbjct: 204 CFNCKKYGHRATECSAPQRECANCGDPNHRANECA 238
Score = 33.5 bits (73), Expect = 0.076
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +3
Query: 279 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 395
++ C+ C GH A EC S + C NC H A C
Sbjct: 201 SNTCFNCKKYGHRATEC--SAPQRECANCGDPNHRANEC 237
Score = 29.9 bits (64), Expect = 0.94
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +3
Query: 351 SCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGH 455
+C+NC K GH A C R+ C NC H
Sbjct: 203 TCFNCKKYGHRATECSAPQRE-----CANCGDPNH 232
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +3
Query: 123 SSVCYKCNRTGHFARECTQGGVGARDAGF-NRQREKCFKCNRTG 251
S+ C+ C + GH A EC+ + G N + +C ++ G
Sbjct: 201 SNTCFNCKKYGHRATECSAPQRECANCGDPNHRANECASWSKNG 244
>AC006672-5|AAM98003.1| 42|Caenorhabditis elegans Hypothetical
protein K08D12.3b protein.
Length = 42
Score = 37.1 bits (82), Expect = 0.006
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 351 SCYNCNKTGHIARNCPEGGRDNSNQ 425
+CY C + GHI+RNCP G D +
Sbjct: 5 NCYKCQQPGHISRNCPNGESDGGRR 29
Score = 32.3 bits (70), Expect = 0.18
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +3
Query: 117 MSSSVCYKCNRTGHFARECTQG-GVGARDAG 206
MS CYKC + GH +R C G G R G
Sbjct: 1 MSDRNCYKCQQPGHISRNCPNGESDGGRRGG 31
Score = 29.1 bits (62), Expect = 1.6
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +3
Query: 228 CFKCNRTGHFARDCKE-EADRCYRCNGTGHI 317
C+KC + GH +R+C E+D R G G +
Sbjct: 6 CYKCQQPGHISRNCPNGESDGGRRGGGGGGV 36
Score = 27.5 bits (58), Expect = 5.0
Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Frame = +3
Query: 279 ADR-CYRCNGTGHIAREC 329
+DR CY+C GHI+R C
Sbjct: 2 SDRNCYKCQQPGHISRNC 19
Score = 27.5 bits (58), Expect = 5.0
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 417 SNQTCYNCNKSGHISR 464
S++ CY C + GHISR
Sbjct: 2 SDRNCYKCQQPGHISR 17
>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
see also lmb-protein 1 protein.
Length = 1067
Score = 36.3 bits (80), Expect = 0.011
Identities = 29/103 (28%), Positives = 38/103 (36%), Gaps = 6/103 (5%)
Frame = +3
Query: 165 RECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPD 344
R C Q +G GF K C+ G DC +++ +C C G R+C Q
Sbjct: 825 RRCDQCAIGTY--GFGPSGCKKCDCDAVGSLGNDCDKQSGQCV-CREKGIYGRQCNQCQP 881
Query: 345 E----PSCYNCNKTGHIARNCPEGGRDNSNQTCYNCN--KSGH 455
P C C H A C D S+ C C +GH
Sbjct: 882 GFWGFPECRTCQCNDH-ANIC-----DQSSGACIECRDLTTGH 918
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 35.9 bits (79), Expect = 0.014
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = +3
Query: 249 GHFARDCKEEADRCYRCNGTGHIARECAQSP---DEPSCYNCNKTGHIARNC--PEG 404
G F + RC C H + EC +P ++ C NC GHI+++C P+G
Sbjct: 417 GTFRPEDLANGARCSNCGSDEHKSWECPDAPNVTNQIKCTNCGAFGHISKDCKNPKG 473
Score = 34.3 bits (75), Expect = 0.044
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +3
Query: 354 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISR 464
C NC H + CP+ + C NC GHIS+
Sbjct: 430 CSNCGSDEHKSWECPDAPNVTNQIKCTNCGAFGHISK 466
Score = 27.9 bits (59), Expect = 3.8
Identities = 15/47 (31%), Positives = 19/47 (40%)
Frame = +3
Query: 132 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCK 272
C C H + EC DA + KC C GH ++DCK
Sbjct: 430 CSNCGSDEHKSWECP-------DAPNVTNQIKCTNCGAFGHISKDCK 469
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 35.9 bits (79), Expect = 0.014
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = +3
Query: 249 GHFARDCKEEADRCYRCNGTGHIARECAQSP---DEPSCYNCNKTGHIARNC--PEG 404
G F + RC C H + EC +P ++ C NC GHI+++C P+G
Sbjct: 417 GTFRPEDLANGARCSNCGSDEHKSWECPDAPNVTNQIKCTNCGAFGHISKDCKNPKG 473
Score = 34.3 bits (75), Expect = 0.044
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +3
Query: 354 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISR 464
C NC H + CP+ + C NC GHIS+
Sbjct: 430 CSNCGSDEHKSWECPDAPNVTNQIKCTNCGAFGHISK 466
Score = 27.9 bits (59), Expect = 3.8
Identities = 15/47 (31%), Positives = 19/47 (40%)
Frame = +3
Query: 132 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCK 272
C C H + EC DA + KC C GH ++DCK
Sbjct: 430 CSNCGSDEHKSWECP-------DAPNVTNQIKCTNCGAFGHISKDCK 469
>Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical
protein F02E9.2b protein.
Length = 196
Score = 35.1 bits (77), Expect = 0.025
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +3
Query: 285 RCYRCNGTG-HIARECAQ-SPDEPSCYNCNKTGHIARNCPEGGR 410
RC+RC H A+ C D CY C H++ CPE R
Sbjct: 112 RCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRR 155
Score = 31.9 bits (69), Expect = 0.23
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Frame = +3
Query: 177 QGGVGARDAGFNRQRE---KCFKCNRTG-HFARDC---KEEADRCYRCNGTGHIARECAQ 335
QG G+R R++ +CF+C + H A+ C K +A CY C H++ C +
Sbjct: 93 QGLKGSRIHPLGRKKAVSLRCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPE 152
>Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical
protein F02E9.2a protein.
Length = 227
Score = 35.1 bits (77), Expect = 0.025
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +3
Query: 285 RCYRCNGTG-HIARECAQ-SPDEPSCYNCNKTGHIARNCPEGGR 410
RC+RC H A+ C D CY C H++ CPE R
Sbjct: 143 RCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRR 186
Score = 31.9 bits (69), Expect = 0.23
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Frame = +3
Query: 177 QGGVGARDAGFNRQRE---KCFKCNRTG-HFARDC---KEEADRCYRCNGTGHIARECAQ 335
QG G+R R++ +CF+C + H A+ C K +A CY C H++ C +
Sbjct: 124 QGLKGSRIHPLGRKKAVSLRCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPE 183
>U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein.
Length = 227
Score = 35.1 bits (77), Expect = 0.025
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +3
Query: 285 RCYRCNGTG-HIARECAQ-SPDEPSCYNCNKTGHIARNCPEGGR 410
RC+RC H A+ C D CY C H++ CPE R
Sbjct: 143 RCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRR 186
Score = 31.9 bits (69), Expect = 0.23
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Frame = +3
Query: 177 QGGVGARDAGFNRQRE---KCFKCNRTG-HFARDC---KEEADRCYRCNGTGHIARECAQ 335
QG G+R R++ +CF+C + H A+ C K +A CY C H++ C +
Sbjct: 124 QGLKGSRIHPLGRKKAVSLRCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPE 183
>U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein.
Length = 227
Score = 35.1 bits (77), Expect = 0.025
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +3
Query: 285 RCYRCNGTG-HIARECAQ-SPDEPSCYNCNKTGHIARNCPEGGR 410
RC+RC H A+ C D CY C H++ CPE R
Sbjct: 143 RCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRR 186
Score = 31.9 bits (69), Expect = 0.23
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Frame = +3
Query: 177 QGGVGARDAGFNRQRE---KCFKCNRTG-HFARDC---KEEADRCYRCNGTGHIARECAQ 335
QG G+R R++ +CF+C + H A+ C K +A CY C H++ C +
Sbjct: 124 QGLKGSRIHPLGRKKAVSLRCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPE 183
>AF016670-8|AAB66101.1| 783|Caenorhabditis elegans Hypothetical
protein K02F6.1 protein.
Length = 783
Score = 34.7 bits (76), Expect = 0.033
Identities = 17/55 (30%), Positives = 22/55 (40%)
Frame = +3
Query: 288 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSG 452
CY+C GH++++C QS N KT H N E G N G
Sbjct: 313 CYKCKVVGHVSKDCPQSSTNSGVTN-RKTEHSEVNTLEVGSGRQTSPSLRLNVEG 366
Score = 31.5 bits (68), Expect = 0.31
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = +3
Query: 348 PSCYNCNKTGHIARNCPEGGRDN 416
P CY C GH++++CP+ ++
Sbjct: 311 PYCYKCKVVGHVSKDCPQSSTNS 333
Score = 27.9 bits (59), Expect = 3.8
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +3
Query: 132 CYKCNRTGHFARECTQGGVGA 194
CYKC GH +++C Q +
Sbjct: 313 CYKCKVVGHVSKDCPQSSTNS 333
Score = 26.6 bits (56), Expect = 8.8
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +3
Query: 228 CFKCNRTGHFARDCKEEA 281
C+KC GH ++DC + +
Sbjct: 313 CYKCKVVGHVSKDCPQSS 330
>Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical
protein F11A10.8 protein.
Length = 302
Score = 34.3 bits (75), Expect = 0.044
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Frame = +3
Query: 228 CFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPS-----CYNCNKTGHIARN 392
C C+ GH A C + R N H + + PD+ + CY C + GH A
Sbjct: 206 CHNCHERGHKATTCPHLPGQT-RQNQDHHHRVDLSLIPDKKNLSDVTCYKCGEKGHYANR 264
Query: 393 CPEG 404
C +G
Sbjct: 265 CHKG 268
Score = 33.9 bits (74), Expect = 0.058
Identities = 17/66 (25%), Positives = 29/66 (43%)
Frame = +3
Query: 258 ARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYN 437
A+ +A C+ C+ GH A C P + N + + + ++ S+ TCY
Sbjct: 196 AKPTYSQAITCHNCHERGHKATTCPHLPGQTR-QNQDHHHRVDLSLIPDKKNLSDVTCYK 254
Query: 438 CNKSGH 455
C + GH
Sbjct: 255 CGEKGH 260
Score = 31.9 bits (69), Expect = 0.23
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 117 MSSSVCYKCNRTGHFARECTQGGV 188
+S CYKC GH+A C +G +
Sbjct: 247 LSDVTCYKCGEKGHYANRCHKGAL 270
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 228 CFKCNRTGHFARDCKEEADRCYRCNGTGHIARE 326
C+KC GH+A C + A + N T H+A E
Sbjct: 252 CYKCGEKGHYANRCHKGA-LAFLSN-TAHLAHE 282
>AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical
protein R52.2 protein.
Length = 1019
Score = 32.7 bits (71), Expect = 0.13
Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Frame = +3
Query: 126 SVCYKCNRTGHFARECTQGGVGARDAGFNRQRE--KCFKCNRTGHFARDCKEEADRCYRC 299
S C C+ T H R +A + RE CF C R+GH C C C
Sbjct: 312 SPCIFCSSTSHVHRHEECPIFNTAEARIQKAREIGLCFGCLRSGHQRSKCSRPR-TCNHC 370
Query: 300 NGTGH 314
G H
Sbjct: 371 KGNHH 375
>U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical protein
K10D2.3 protein.
Length = 1425
Score = 32.3 bits (70), Expect = 0.18
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +3
Query: 132 CYKCNRTGHFARECTQGGVG--ARDAGFNRQREKCFKCNRTGHFARDCKEEADR 287
C++C+R GHF C Q + AR + ++ N +G ++ +E DR
Sbjct: 1357 CHQCHRIGHFVESCPQRALAKEARKRFGSNSTNSSYRSNDSGRGFKNGEEGGDR 1410
Score = 31.5 bits (68), Expect = 0.31
Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +3
Query: 315 IARECAQ--SPDEPSCYNCNKTGHIARNCPE 401
+ R+C Q +P + C+ C++ GH +CP+
Sbjct: 1342 LLRKCNQGSAPTDRQCHQCHRIGHFVESCPQ 1372
Score = 31.5 bits (68), Expect = 0.31
Identities = 26/81 (32%), Positives = 34/81 (41%)
Frame = +3
Query: 165 RECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPD 344
R+C QG A +RQ C +C+R GHF C + A AR+ S
Sbjct: 1344 RKCNQGS-----APTDRQ---CHQCHRIGHFVESCPQRA--------LAKEARKRFGSNS 1387
Query: 345 EPSCYNCNKTGHIARNCPEGG 407
S Y N +G +N EGG
Sbjct: 1388 TNSSYRSNDSGRGFKNGEEGG 1408
>AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical
protein F54G2.2 protein.
Length = 1023
Score = 29.9 bits (64), Expect = 0.94
Identities = 13/55 (23%), Positives = 23/55 (41%)
Frame = +3
Query: 123 SSVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADR 287
+ +C +C + G C+ + + R +CF C GH + C + DR
Sbjct: 578 NGICAECKQVGGHEPSCS---LAPKTWKRERPPPQCFTCGEMGHISTYCPKRIDR 629
Score = 29.9 bits (64), Expect = 0.94
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 7/45 (15%)
Frame = +3
Query: 288 CYRCNGTGHIARECAQSPDE-------PSCYNCNKTGHIARNCPE 401
C C G C+ +P P C+ C + GHI+ CP+
Sbjct: 581 CAECKQVGGHEPSCSLAPKTWKRERPPPQCFTCGEMGHISTYCPK 625
>Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical
protein T12D8.1 protein.
Length = 2561
Score = 29.5 bits (63), Expect = 1.2
Identities = 17/75 (22%), Positives = 29/75 (38%)
Frame = +3
Query: 222 EKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPE 401
E C NR+G + D + D C + + D C C K+ H++ + +
Sbjct: 60 ENCMDVNRSGTMSLDMARQCDMSSSCGSCQRMI-----TADSRQCTTCRKSYHLSCDSSD 114
Query: 402 GGRDNSNQTCYNCNK 446
N N C +C +
Sbjct: 115 VSSLN-NFVCISCRR 128
>Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical
protein T12D8.1 protein.
Length = 2561
Score = 29.5 bits (63), Expect = 1.2
Identities = 17/75 (22%), Positives = 29/75 (38%)
Frame = +3
Query: 222 EKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPE 401
E C NR+G + D + D C + + D C C K+ H++ + +
Sbjct: 60 ENCMDVNRSGTMSLDMARQCDMSSSCGSCQRMI-----TADSRQCTTCRKSYHLSCDSSD 114
Query: 402 GGRDNSNQTCYNCNK 446
N N C +C +
Sbjct: 115 VSSLN-NFVCISCRR 128
>AL132952-16|CAC70119.1| 107|Caenorhabditis elegans Hypothetical
protein Y51H4A.26 protein.
Length = 107
Score = 29.5 bits (63), Expect = 1.2
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Frame = +3
Query: 258 ARDCKEEAD-RCYRCNGTGHIARECAQSPDEPSCYNCNKTGH----IARNCPE 401
A+ C+ D + Y+ GH R+C D P Y C K G I +NCP+
Sbjct: 37 AKKCENYFDCQQYQTCIFGHCVRKCTSERDCPLGYICFKNGDGQRCIKKNCPK 89
>U20861-8|AAA62297.3| 372|Caenorhabditis elegans Hypothetical
protein C28H8.9a protein.
Length = 372
Score = 29.1 bits (62), Expect = 1.6
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +3
Query: 273 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGH 380
E + C C+GT + + D SC++C ++GH
Sbjct: 252 EISTSCDFCSGTAFMNKNTKLPEDLVSCHDCGRSGH 287
>AF100656-7|AAF99964.2| 615|Caenorhabditis elegans Hypothetical
protein F49F1.8 protein.
Length = 615
Score = 29.1 bits (62), Expect = 1.6
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 213 RQREKCFKCNRTGHFARDCKEEA 281
R + +C C GH AR+CK++A
Sbjct: 571 RFKGQCHYCKNVGHMARNCKKKA 593
Score = 29.1 bits (62), Expect = 1.6
Identities = 10/36 (27%), Positives = 14/36 (38%)
Frame = +3
Query: 132 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKC 239
C+ C GH AR C + + G+ Q C
Sbjct: 576 CHYCKNVGHMARNCKKKAFAEKRKGYEDQARSITSC 611
Score = 27.1 bits (57), Expect = 6.6
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +3
Query: 354 CYNCNKTGHIARNC 395
C+ C GH+ARNC
Sbjct: 576 CHYCKNVGHMARNC 589
>Z54236-5|CAA90980.1| 386|Caenorhabditis elegans Hypothetical
protein C27B7.5 protein.
Length = 386
Score = 28.3 bits (60), Expect = 2.9
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +3
Query: 354 CYNCNKTGHIARNCPE 401
C++C + GHI+R CP+
Sbjct: 170 CFHCQEHGHISRMCPK 185
>AL031630-5|CAA20985.1| 915|Caenorhabditis elegans Hypothetical
protein Y38H6C.5 protein.
Length = 915
Score = 27.9 bits (59), Expect = 3.8
Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Frame = +3
Query: 132 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCN-GT 308
CY C + GH A EC + D N +R+ + + R + D Y + T
Sbjct: 411 CYYCGKRGHTANECRR---KKSDESQNGERQDPSQSEQIAALRRQLAMQNDDPYSSDEST 467
Query: 309 GHIARECAQSPDEPS 353
++ C + ++P+
Sbjct: 468 EALSLSCQKPKEDPT 482
Score = 27.1 bits (57), Expect = 6.6
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = +3
Query: 351 SCYNCNKTGHIARNCPEGGRDNS 419
+CY C K GH A C D S
Sbjct: 410 NCYYCGKRGHTANECRRKKSDES 432
>Z54281-2|CAA91045.3| 399|Caenorhabditis elegans Hypothetical
protein F46C5.3 protein.
Length = 399
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +3
Query: 354 CYN-CNKTGHIARNCPEGGRDNSNQTCYNCN 443
CY+ C G +A NC GG N N C CN
Sbjct: 236 CYDSCRNAGQLA-NCANGGIPNPN-NCQVCN 264
>AL132895-2|CAC14404.1| 613|Caenorhabditis elegans Hypothetical
protein Y59A8A.2 protein.
Length = 613
Score = 27.5 bits (58), Expect = 5.0
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +3
Query: 294 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPE----GGRDNSNQTCYNCNKS 449
+ N T + R+ + + C C+K+ HI P R+N C+ CN+S
Sbjct: 524 KMNYTCVVCRKSTEQHKQTQCDECHKSYHIGCLSPPLTRLPKRNNFGWICHECNES 579
>U80955-3|AAM97944.1| 95|Caenorhabditis elegans Mlp/crp family
(muscle lim protein/cysteine-rich protein) protein 1,
isoform a protein.
Length = 95
Score = 27.1 bits (57), Expect = 6.6
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Frame = +3
Query: 216 QREKCFKCNRTGHFARDCKEEADR----CYRCNGTGHIARECAQSPDEPSCYNCNKTGHI 383
+ KC KC ++ + A + + C++CN + C +P E Y C K H
Sbjct: 7 EHPKCPKCGKSVYAAEEMSAGGYKWHKFCFKCNMCNKLLDSCTVAPHEAELY-C-KQCHG 64
Query: 384 ARNCPEG 404
+ P+G
Sbjct: 65 RKFGPKG 71
Score = 26.6 bits (56), Expect = 8.8
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Frame = +3
Query: 132 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDC---KEEAD-RCYRC 299
C KC ++ + A E + GG + + CFKCN C EA+ C +C
Sbjct: 11 CPKCGKSVYAAEEMSAGGY--------KWHKFCFKCNMCNKLLDSCTVAPHEAELYCKQC 62
Query: 300 NG 305
+G
Sbjct: 63 HG 64
>U80955-1|AAM97945.1| 113|Caenorhabditis elegans Mlp/crp family
(muscle lim protein/cysteine-rich protein) protein 1,
isoform b protein.
Length = 113
Score = 27.1 bits (57), Expect = 6.6
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Frame = +3
Query: 216 QREKCFKCNRTGHFARDCKEEADR----CYRCNGTGHIARECAQSPDEPSCYNCNKTGHI 383
+ KC KC ++ + A + + C++CN + C +P E Y C K H
Sbjct: 7 EHPKCPKCGKSVYAAEEMSAGGYKWHKFCFKCNMCNKLLDSCTVAPHEAELY-C-KQCHG 64
Query: 384 ARNCPEG 404
+ P+G
Sbjct: 65 RKFGPKG 71
Score = 26.6 bits (56), Expect = 8.8
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Frame = +3
Query: 132 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDC---KEEAD-RCYRC 299
C KC ++ + A E + GG + + CFKCN C EA+ C +C
Sbjct: 11 CPKCGKSVYAAEEMSAGGY--------KWHKFCFKCNMCNKLLDSCTVAPHEAELYCKQC 62
Query: 300 NG 305
+G
Sbjct: 63 HG 64
>Z81546-10|CAH10812.1| 674|Caenorhabditis elegans Hypothetical
protein F53A2.8c protein.
Length = 674
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 198 RGRLRHLACTRGRSAPSCCTCSIRLNSFSIRCI 100
RGRL L ++ + C C+ L FS RC+
Sbjct: 182 RGRLPVLTYFHQQTEAALCRCAQPLTGFSARCV 214
>Z81546-9|CAD45596.2| 782|Caenorhabditis elegans Hypothetical
protein F53A2.8b protein.
Length = 782
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 198 RGRLRHLACTRGRSAPSCCTCSIRLNSFSIRCI 100
RGRL L ++ + C C+ L FS RC+
Sbjct: 290 RGRLPVLTYFHQQTEAALCRCAQPLTGFSARCV 322
>Z81546-8|CAB04456.1| 676|Caenorhabditis elegans Hypothetical
protein F53A2.8a protein.
Length = 676
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 198 RGRLRHLACTRGRSAPSCCTCSIRLNSFSIRCI 100
RGRL L ++ + C C+ L FS RC+
Sbjct: 184 RGRLPVLTYFHQQTEAALCRCAQPLTGFSARCV 216
>Z81491-10|CAB04023.3| 282|Caenorhabditis elegans Hypothetical
protein D1086.6 protein.
Length = 282
Score = 26.6 bits (56), Expect = 8.8
Identities = 13/50 (26%), Positives = 18/50 (36%)
Frame = +3
Query: 297 CNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNK 446
C I A +P E C NK + R C G + + C+K
Sbjct: 77 CQSACGIPHVLASNPTEEVCEKWNKCDDVKRQCAAAGGNYYAGANFQCSK 126
>U28741-4|AAA68328.1| 747|Caenorhabditis elegans Hypothetical
protein F35D2.4 protein.
Length = 747
Score = 26.6 bits (56), Expect = 8.8
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 9/63 (14%)
Frame = +3
Query: 207 FNRQREKCFKCNRTGHFARD-----CKEEADRCYRCNGTGHIARECAQ----SPDEPSCY 359
FNR +C C T + D C + +R NG EC + SPD+ C
Sbjct: 11 FNRIELRCEICPNTTIPSDDMMSCKCSKNQIEIFR-NGFVPTCEECPEGTLSSPDQTGCL 69
Query: 360 NCN 368
NCN
Sbjct: 70 NCN 72
>AY313179-1|AAP79304.1| 782|Caenorhabditis elegans
myotubularin-related protein MTM-6B protein.
Length = 782
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 198 RGRLRHLACTRGRSAPSCCTCSIRLNSFSIRCI 100
RGRL L ++ + C C+ L FS RC+
Sbjct: 290 RGRLPVLTYFHQQTEAALCRCAQPLTGFSARCV 322
>AY313177-1|AAP79302.1| 676|Caenorhabditis elegans
myotubularin-related protein MTM-6A protein.
Length = 676
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 198 RGRLRHLACTRGRSAPSCCTCSIRLNSFSIRCI 100
RGRL L ++ + C C+ L FS RC+
Sbjct: 184 RGRLPVLTYFHQQTEAALCRCAQPLTGFSARCV 216
>AL021448-1|CAA16276.2| 898|Caenorhabditis elegans Hypothetical
protein Y2H9A.1 protein.
Length = 898
Score = 26.6 bits (56), Expect = 8.8
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +3
Query: 288 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRD 413
C CN H ++ A D C C + H+ P GGRD
Sbjct: 208 CNSCNLDHH--KQSAYVGDIAECALCLRAFHLTSCYPSGGRD 247
>AF233290-1|AAF62516.1| 898|Caenorhabditis elegans maternal-effect
sterile 4 protein.
Length = 898
Score = 26.6 bits (56), Expect = 8.8
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +3
Query: 288 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRD 413
C CN H ++ A D C C + H+ P GGRD
Sbjct: 208 CNSCNLDHH--KQSAYVGDIAECALCLRAFHLTSCYPSGGRD 247
>AC024809-9|AAO12399.1| 700|Caenorhabditis elegans Hypothetical
protein Y53G8AR.2b protein.
Length = 700
Score = 26.6 bits (56), Expect = 8.8
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Frame = +3
Query: 264 DCKEEADRCYRCNGTGH-IARECAQSPDEPSCYNCNKTGHIARNCP 398
D +E C CN H + + PD + C K H+ CP
Sbjct: 249 DVADEMVFCDMCNTCVHMVCAGIEELPDPAEPWKCAKCAHMGTPCP 294
>AC024809-8|AAF59546.2| 741|Caenorhabditis elegans Hypothetical
protein Y53G8AR.2a protein.
Length = 741
Score = 26.6 bits (56), Expect = 8.8
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Frame = +3
Query: 264 DCKEEADRCYRCNGTGH-IARECAQSPDEPSCYNCNKTGHIARNCP 398
D +E C CN H + + PD + C K H+ CP
Sbjct: 290 DVADEMVFCDMCNTCVHMVCAGIEELPDPAEPWKCAKCAHMGTPCP 335
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,498,259
Number of Sequences: 27780
Number of extensions: 176284
Number of successful extensions: 990
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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