Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_F21
         (452 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch...    27   1.8  
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    26   3.1  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    25   4.1  
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2...    25   5.4  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    25   5.4  
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.2  

>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 245

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +1

Query: 265 TTEHSPFWRDSSRFHQTLSEQMIFQIDE 348
           + E+ PFW D++  ++     +I++ID+
Sbjct: 30  SAENDPFWTDANELNELEGPAVIYKIDD 57


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +1

Query: 265 TTEHSPFWRDSSRFHQTLS-EQMIFQIDEPTKHMLIEKYYDLDDAVIRELLGRKL 426
           T E S  WR      + L  +  +  +DEPT H+ +E    L++ +  E+ G  L
Sbjct: 418 TNELSGGWRMRIALARILFIKPTLMMLDEPTNHLDLEAVAWLEEYLTHEMEGHTL 472


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 9/44 (20%), Positives = 20/44 (45%)
 Frame = +1

Query: 262 TTTEHSPFWRDSSRFHQTLSEQMIFQIDEPTKHMLIEKYYDLDD 393
           +  E S +W  S +FH+   ++ +   +   KH   +  ++  D
Sbjct: 386 SVVESSEYWCRSRKFHRVDPKRRVLLAERSAKHQNTDNLFETPD 429


>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 426

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 447 VFSMSRRQFSAEKLSDDSII*VVVF 373
           +F+     FS  KLSDDSI  + +F
Sbjct: 204 IFNFKNGSFSTRKLSDDSINHIQLF 228


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 151 SYGLRDAHLVKKCLHCINVE 210
           S G RD H  + C +C+++E
Sbjct: 287 SLGFRDIHAKEACQYCVSLE 306


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 9/34 (26%), Positives = 21/34 (61%)
 Frame = -2

Query: 199 CNVDTFSLDEHPSIHSWYISGSISV*LLTNTSTS 98
           C++++ S+  + +   W  + S+S  + TNT++S
Sbjct: 340 CSINSASMSSNTTYFYWNSTSSLSSSVFTNTTSS 373


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,833,425
Number of Sequences: 5004
Number of extensions: 36294
Number of successful extensions: 97
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)