Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_F21
         (452 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0735 - 6739502-6739908,6740016-6740510,6740848-6741280           30   0.76 
09_02_0308 + 7137099-7137132,7137495-7137611,7138252-7138319,713...    29   2.3  

>08_01_0735 - 6739502-6739908,6740016-6740510,6740848-6741280
          Length = 444

 Score = 30.3 bits (65), Expect = 0.76
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = +3

Query: 171 SSSEKVSTLHQRGAARKLGASVELIASEVLDH---YRTFALLERLLTVP 308
           S++  VSTL Q G A  +G S+  +  E+LDH        L+ERL   P
Sbjct: 307 SNANAVSTL-QSGIANSVGLSLSYLNKEILDHNVDISLSTLIERLKNAP 354


>09_02_0308 +
           7137099-7137132,7137495-7137611,7138252-7138319,
           7138413-7138538,7138650-7139619,7139641-7139737,
           7140026-7140113,7140336-7140396,7140425-7140447,
           7140663-7140776,7141193-7141306,7144731-7144825,
           7146506-7146824,7147166-7147309,7147463-7147564,
           7147868-7147971,7148121-7148247,7148804-7148845,
           7148939-7149091,7149326-7149426,7149807-7150227
          Length = 1139

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 274 HSPFWRDSSRFHQTLSEQMIFQID 345
           H+P W++SSRFH + +   + +ID
Sbjct: 234 HTPSWQNSSRFHNSSAATDLHRID 257


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,949,938
Number of Sequences: 37544
Number of extensions: 203917
Number of successful extensions: 468
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)