Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_F21
         (452 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical pr...    28   3.7  
U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z80216-2|CAB02279.2|  239|Caenorhabditis elegans Hypothetical pr...    27   4.8  
U23147-1|AAC46692.2|  674|Caenorhabditis elegans Hypothetical pr...    27   6.4  
AC024761-4|AAF59466.2|  332|Caenorhabditis elegans Hypothetical ...    27   8.4  

>U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical protein
            C30G12.6a protein.
          Length = 1100

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 180  EKVSTLHQRGAARKLGASVELIASEVL 260
            EKV TLH+R  A KLG   + +  EV+
Sbjct: 994  EKVITLHERMNALKLGVDFKKVKKEVI 1020


>U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical protein
            C30G12.6b protein.
          Length = 1097

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 180  EKVSTLHQRGAARKLGASVELIASEVL 260
            EKV TLH+R  A KLG   + +  EV+
Sbjct: 994  EKVITLHERMNALKLGVDFKKVKKEVI 1020


>Z80216-2|CAB02279.2|  239|Caenorhabditis elegans Hypothetical
           protein F10G8.2 protein.
          Length = 239

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = -1

Query: 368 INICFVGSSI*KIICSDNV*WNREESLQKGECSVVVQNFAGYQLNRGTKFSCCSTLMQCR 189
           I I  +  S    I   N  W +E+  +K     VV NF+   L   TK+S  ST+M+  
Sbjct: 76  IKIAVIAVSCFPYIIVQNEVWFKEQ--KKHHVIHVVHNFSSKLLVNTTKYSRSSTVMRFN 133

Query: 188 -HFFTR 174
            H  TR
Sbjct: 134 LHLITR 139


>U23147-1|AAC46692.2|  674|Caenorhabditis elegans Hypothetical
           protein C18H9.8 protein.
          Length = 674

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = -2

Query: 412 EALG*QHHLSRSIFQLTYVSLVHLFERSSVLTTFDGTVRSLSKRANVL*WSKTSLAINST 233
           E L  Q+ LS+ I    Y +L H+F   SVL +      S +        + +S    ST
Sbjct: 6   ELLTNQNGLSKLIISFNYSALSHIFHSWSVLVSMTTKHASTTNTRMERPSTASSRPRTST 65

Query: 232 -EAPSFRAAP 206
             APS RA P
Sbjct: 66  GRAPSARARP 75


>AC024761-4|AAF59466.2|  332|Caenorhabditis elegans Hypothetical
           protein Y38C1AA.6 protein.
          Length = 332

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 142 KYTSYGLRDAHLVKKCLHCINVEQHEN 222
           KYT  G RD  L+   L C N +  ++
Sbjct: 296 KYTELGARDFQLIDTVLECFNEDDEDS 322


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,971,458
Number of Sequences: 27780
Number of extensions: 197796
Number of successful extensions: 446
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)