Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_F21
         (452 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    25   0.29 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   1.2  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   1.2  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   2.1  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   2.7  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    21   8.3  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   8.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   8.3  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   8.3  

>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 25.4 bits (53), Expect = 0.29
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 308 WNREESLQKGECSVVVQNFAGYQLNRGTK 222
           WN  +SLQ+    +V QN    Q+  G K
Sbjct: 328 WNEHQSLQRQNLEMVAQNDRTLQMIAGMK 356


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = -1

Query: 281 GECSVVVQNFAGYQLNRGTKFSCCSTLMQCRHFFTR*ASLNP*LVYFRIYKRVITNEYVY 102
           G    + +   GY L   +K+    + ++   F T  +  +P   ++RIYKR+I   + Y
Sbjct: 379 GSIDTLARKILGYNLEAASKYQIVPSALEI--FST--SMKDP--AFYRIYKRIIDYYHSY 432


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = -1

Query: 281 GECSVVVQNFAGYQLNRGTKFSCCSTLMQCRHFFTR*ASLNP*LVYFRIYKRVITNEYVY 102
           G    + +   GY L   +K+    + ++   F T  +  +P   ++RIYKR+I   + Y
Sbjct: 379 GSIDTLARKILGYNLEAASKYQIVPSALEI--FST--SMKDP--AFYRIYKRIIDYYHSY 432


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 9/41 (21%), Positives = 22/41 (53%)
 Frame = +1

Query: 328 MIFQIDEPTKHMLIEKYYDLDDAVIRELLGRKLSSRHRKDL 450
           M+  + E +   +  K+Y + D + R++LG     +++ +L
Sbjct: 363 MLGNVIEGSSDSINTKFYGMYDILARDILGYNFDFQNKNNL 403



 Score = 21.8 bits (44), Expect = 3.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 250 AKFWTTTEHSPFWRDSSRFH 309
           A ++   E  P+W  SS++H
Sbjct: 232 AYYYYMREMLPYWMSSSQYH 251


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 9/41 (21%), Positives = 21/41 (51%)
 Frame = +1

Query: 328 MIFQIDEPTKHMLIEKYYDLDDAVIRELLGRKLSSRHRKDL 450
           M+  + E     +  K+Y + D + R++LG     +++ +L
Sbjct: 363 MLGNVIEGNSDSINTKFYGMYDILARDILGYNFDFQNKNNL 403



 Score = 21.8 bits (44), Expect = 3.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 250 AKFWTTTEHSPFWRDSSRFH 309
           A ++   E  P+W  SS++H
Sbjct: 232 AYYYYMREMLPYWMSSSQYH 251


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 160 LRDAHLVKKCLHCINVEQHENLV 228
           L+D   V+K LHCI    H +++
Sbjct: 27  LKDRPYVQKQLHCILDRGHCDVI 49


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -1

Query: 53  CHYKIDTTGYELR 15
           CH +I++ GY +R
Sbjct: 152 CHIEIESFGYTMR 164


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -1

Query: 53  CHYKIDTTGYELR 15
           CH +I++ GY +R
Sbjct: 152 CHIEIESFGYTMR 164


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -1

Query: 53  CHYKIDTTGYELR 15
           CH +I++ GY +R
Sbjct: 91  CHIEIESFGYTMR 103


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,707
Number of Sequences: 438
Number of extensions: 2416
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)