Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_F18
(426 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P05388 Cluster: 60S acidic ribosomal protein P0; n=171;... 201 6e-51
UniRef50_Q9PV90 Cluster: 60S acidic ribosomal protein P0; n=11; ... 196 2e-49
UniRef50_Q4KTH7 Cluster: 60S acidic ribosomal protein P0; n=3; M... 169 2e-41
UniRef50_UPI0000499842 Cluster: 60S acidic ribosomal protein P0;... 129 3e-29
UniRef50_P57691 Cluster: 60S acidic ribosomal protein P0-3; n=10... 119 3e-26
UniRef50_O04204 Cluster: 60S acidic ribosomal protein P0-1; n=27... 113 1e-24
UniRef50_Q94660 Cluster: 60S acidic ribosomal protein P0; n=14; ... 108 4e-23
UniRef50_Q8TX50 Cluster: Acidic ribosomal protein P0 homolog; n=... 85 4e-16
UniRef50_P22685 Cluster: 60S acidic ribosomal protein P0; n=2; D... 81 1e-14
UniRef50_Q7QU12 Cluster: 60S acidic ribosomal protein P0; n=1; G... 75 5e-13
UniRef50_A0DDF2 Cluster: 60S acidic ribosomal protein P0; n=6; P... 74 1e-12
UniRef50_Q52H32 Cluster: 60S acidic ribosomal protein P0; n=4; E... 72 4e-12
UniRef50_Q9U7P1 Cluster: 60S acidic ribosomal protein P0; n=1; E... 72 6e-12
UniRef50_Q16RH9 Cluster: Temporarily assignedprotein name protei... 70 2e-11
UniRef50_O94085 Cluster: Putative uncharacterized protein YLR339... 69 3e-11
UniRef50_Q98S65 Cluster: 60S acidic ribosomal protein P0; n=1; G... 68 9e-11
UniRef50_Q22HK6 Cluster: 60S acidic ribosomal protein P0; n=2; T... 68 9e-11
UniRef50_A2EES5 Cluster: 60S acidic ribosomal protein P0; n=6; T... 66 4e-10
UniRef50_Q8SRJ7 Cluster: 60S ACIDIC RIBOSOMAL PROTEIN P0; n=1; E... 61 8e-09
UniRef50_P13553 Cluster: Acidic ribosomal protein P0 homolog; n=... 60 2e-08
UniRef50_Q6CW90 Cluster: Similarities with sp|O94085 Saccharomyc... 56 3e-07
UniRef50_P26796 Cluster: 60S acidic ribosomal protein P0; n=12; ... 56 3e-07
UniRef50_O74109 Cluster: Acidic ribosomal protein P0 homolog; n=... 53 2e-06
UniRef50_Q7R447 Cluster: GLP_254_32992_33747; n=1; Giardia lambl... 49 5e-05
UniRef50_A3CSJ7 Cluster: Ribosomal protein L10; n=4; Methanomicr... 48 1e-04
UniRef50_Q3LWA7 Cluster: Ribosomal protein L10; n=1; Bigelowiell... 47 1e-04
UniRef50_A5BWW8 Cluster: Putative uncharacterized protein; n=1; ... 47 1e-04
UniRef50_Q7S302 Cluster: mRNA turnover protein 4 homolog; n=17; ... 47 1e-04
UniRef50_Q2Y4X9 Cluster: Acidic ribosomal protein P0; n=1; uncul... 47 2e-04
UniRef50_P15826 Cluster: Acidic ribosomal protein P0 homolog; n=... 47 2e-04
UniRef50_Q5BY73 Cluster: SJCHGC01801 protein; n=1; Schistosoma j... 46 2e-04
UniRef50_Q8ZTT3 Cluster: Acidic ribosomal protein P0 homolog; n=... 46 2e-04
UniRef50_A5C7V3 Cluster: Putative uncharacterized protein; n=2; ... 46 4e-04
UniRef50_Q2NEW2 Cluster: 50S ribosomal protein L10P; n=1; Methan... 46 4e-04
UniRef50_A3H9G5 Cluster: Ribosomal protein L10; n=1; Caldivirga ... 45 6e-04
UniRef50_A7Q681 Cluster: Chromosome undetermined scaffold_55, wh... 44 0.001
UniRef50_Q7K1Q7 Cluster: LD47064p; n=7; Endopterygota|Rep: LD470... 44 0.002
UniRef50_Q4Q0U9 Cluster: 60S acidic ribosomal protein, putative;... 42 0.007
UniRef50_P96039 Cluster: Acidic ribosomal protein P0 homolog; n=... 41 0.012
UniRef50_A4S8Z4 Cluster: Predicted protein; n=2; Ostreococcus|Re... 40 0.021
UniRef50_UPI0000ECA2B0 Cluster: mRNA turnover protein 4 homolog.... 40 0.028
UniRef50_A7PSP2 Cluster: Chromosome chr6 scaffold_28, whole geno... 38 0.087
UniRef50_Q4PHU5 Cluster: Putative uncharacterized protein; n=1; ... 38 0.11
UniRef50_Q19302 Cluster: Putative uncharacterized protein; n=2; ... 37 0.20
UniRef50_A7DRL3 Cluster: Ribosomal protein L10; n=1; Candidatus ... 35 0.61
UniRef50_O28781 Cluster: Acidic ribosomal protein P0 homolog; n=... 35 0.81
UniRef50_UPI000150A24A Cluster: hypothetical protein TTHERM_0050... 34 1.1
UniRef50_Q0W051 Cluster: 50S ribosomal protein L10E; n=1; uncult... 34 1.4
UniRef50_Q58J68 Cluster: Mitochondrial SBP40; n=1; Solanum tuber... 33 2.5
UniRef50_Q4TAP6 Cluster: Chromosome undetermined SCAF7271, whole... 33 3.3
UniRef50_A6C829 Cluster: Putative uncharacterized protein; n=1; ... 32 5.7
UniRef50_Q8IDM7 Cluster: DNA topoisomerase III, putative; n=2; P... 31 7.5
UniRef50_UPI00005874CE Cluster: PREDICTED: similar to OTTHUMP000... 31 9.9
UniRef50_Q7NAE7 Cluster: PutA; n=1; Mycoplasma gallisepticum|Rep... 31 9.9
UniRef50_Q3BXL0 Cluster: TonB-dependent outer membrane receptor ... 31 9.9
UniRef50_A6D6W3 Cluster: Putative uncharacterized protein; n=1; ... 31 9.9
UniRef50_A5BI07 Cluster: Putative uncharacterized protein; n=6; ... 31 9.9
UniRef50_Q4PEA5 Cluster: Putative uncharacterized protein; n=1; ... 31 9.9
>UniRef50_P05388 Cluster: 60S acidic ribosomal protein P0; n=171;
Eukaryota|Rep: 60S acidic ribosomal protein P0 - Homo
sapiens (Human)
Length = 317
Score = 201 bits (490), Expect = 6e-51
Identities = 93/116 (80%), Positives = 105/116 (90%)
Frame = +3
Query: 75 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 254
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 255 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAI 422
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD LL NKV A AR GAI
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAI 116
>UniRef50_Q9PV90 Cluster: 60S acidic ribosomal protein P0; n=11;
Eukaryota|Rep: 60S acidic ribosomal protein P0 - Danio
rerio (Zebrafish) (Brachydanio rerio)
Length = 319
Score = 196 bits (478), Expect = 2e-49
Identities = 91/116 (78%), Positives = 104/116 (89%)
Frame = +3
Query: 75 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 254
M RED+ATWKSNYF+KIIQLLD++PKCFIVGADNVGS+QMQ IR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDFPKCFIVGADNVGSKQMQTIRLSLRGKAVVLMGKNTM 60
Query: 255 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAI 422
MRKAI+ HLE NPALE+LLPHI+GNVGFVFT+ DL +VRD LL NKV A AR GAI
Sbjct: 61 MRKAIRGHLENNPALERLLPHIRGNVGFVFTKEDLTEVRDLLLANKVPAAARAGAI 116
>UniRef50_Q4KTH7 Cluster: 60S acidic ribosomal protein P0; n=3;
Metazoa|Rep: 60S acidic ribosomal protein P0 - Suberites
domuncula (Sponge)
Length = 313
Score = 169 bits (411), Expect = 2e-41
Identities = 74/116 (63%), Positives = 95/116 (81%)
Frame = +3
Query: 75 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 254
MGREDKA WKSNY ++++ L DEY + +V DNVGS+QMQQIRISLRG + +LMGKNT
Sbjct: 1 MGREDKAAWKSNYVMRLLSLFDEYKRVLLVNVDNVGSKQMQQIRISLRGKATILMGKNTT 60
Query: 255 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAI 422
+RKA++ HLE NP LEK+LPH+KGN+GFVFT D+VD+R+ +L N+V APA+ GAI
Sbjct: 61 IRKALRGHLEQNPNLEKVLPHVKGNIGFVFTHEDMVDIREIMLSNQVGAPAKAGAI 116
>UniRef50_UPI0000499842 Cluster: 60S acidic ribosomal protein P0;
n=3; Entamoeba histolytica HM-1:IMSS|Rep: 60S acidic
ribosomal protein P0 - Entamoeba histolytica HM-1:IMSS
Length = 316
Score = 129 bits (311), Expect = 3e-29
Identities = 62/116 (53%), Positives = 80/116 (68%)
Frame = +3
Query: 75 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 254
+ +E K K Y VK+ +LL+EY + +V DNVGS Q Q IR LRG +MGKNT+
Sbjct: 8 LSKEQKKAKKEAYLVKMKKLLEEYKQVVVVKCDNVGSSQFQTIRKELRGTCEFVMGKNTL 67
Query: 255 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAI 422
+RKAIK+ ET P LE+LLPHIKGNVGF+FT+GDL ++ KL E K +PA+ G I
Sbjct: 68 IRKAIKNQAETQPELEELLPHIKGNVGFIFTKGDLYQLKAKLTELKAPSPAKAGVI 123
>UniRef50_P57691 Cluster: 60S acidic ribosomal protein P0-3; n=10;
Eukaryota|Rep: 60S acidic ribosomal protein P0-3 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 323
Score = 119 bits (286), Expect = 3e-26
Identities = 59/118 (50%), Positives = 82/118 (69%), Gaps = 2/118 (1%)
Frame = +3
Query: 75 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 254
M + KA K Y K+ QL+DEY + +V ADNVGS Q+Q IR LRG S+VLMGKNTM
Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60
Query: 255 MRKAIKDHLET--NPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAI 422
M+++++ H E N A+ LLP ++GNVG +FT+GDL +V +++ + KV APAR G +
Sbjct: 61 MKRSVRIHSENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLV 118
>UniRef50_O04204 Cluster: 60S acidic ribosomal protein P0-1; n=27;
Eukaryota|Rep: 60S acidic ribosomal protein P0-1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 317
Score = 113 bits (273), Expect = 1e-24
Identities = 57/113 (50%), Positives = 79/113 (69%), Gaps = 2/113 (1%)
Frame = +3
Query: 90 KATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAI 269
KA K Y K+ QLL+EY + +V ADNVGS Q+Q IR LRG S+VLMGKNTMM++++
Sbjct: 7 KAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSV 66
Query: 270 KDHLET--NPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAI 422
+ H + N A LLP ++GNVG +FT+GDL +V +++ + KV APAR G +
Sbjct: 67 RIHADKTGNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLV 119
>UniRef50_Q94660 Cluster: 60S acidic ribosomal protein P0; n=14;
Apicomplexa|Rep: 60S acidic ribosomal protein P0 -
Plasmodium falciparum (isolate 7G8)
Length = 316
Score = 108 bits (260), Expect = 4e-23
Identities = 55/117 (47%), Positives = 76/117 (64%), Gaps = 1/117 (0%)
Frame = +3
Query: 75 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 254
M + K K Y K+ L+ +Y K IV DNVGS QM +R SLRG + +LMGKNT
Sbjct: 1 MAKLSKQQKKQMYIEKLSSLIQQYSKILIVHVDNVGSNQMASVRKSLRGKATILMGKNTR 60
Query: 255 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQA-PARPGAI 422
+R A+K +L+ P +EKLLP +K N+GFVF + DL ++R+ +L+NK + PAR G I
Sbjct: 61 IRTALKKNLQAVPQIEKLLPLVKLNMGFVFCKDDLSEIRNIILDNKSSSHPARLGVI 117
>UniRef50_Q8TX50 Cluster: Acidic ribosomal protein P0 homolog; n=4;
Euryarchaeota|Rep: Acidic ribosomal protein P0 homolog -
Methanopyrus kandleri
Length = 357
Score = 85.4 bits (202), Expect = 4e-16
Identities = 47/121 (38%), Positives = 71/121 (58%), Gaps = 2/121 (1%)
Frame = +3
Query: 66 QSKMGREDK-ATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGH-SIVLM 239
Q G E K A WK ++ +L+DEY +V + + + Q+Q+IR LR +I+ M
Sbjct: 8 QPPSGYEPKVAEWKRREVKELKELMDEYENVGLVDLEGIPAPQLQEIRAKLRERDTIIRM 67
Query: 240 GKNTMMRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGA 419
+NT+MR A+++ L+ P LE LL +I+G V F+FT D + L E+K APA+PG
Sbjct: 68 SRNTLMRIALEEKLDERPELEPLLDYIEGPVAFIFTNLDPFKLYKLLEESKASAPAKPGD 127
Query: 420 I 422
I
Sbjct: 128 I 128
>UniRef50_P22685 Cluster: 60S acidic ribosomal protein P0; n=2;
Dictyostelium discoideum|Rep: 60S acidic ribosomal
protein P0 - Dictyostelium discoideum (Slime mold)
Length = 305
Score = 80.6 bits (190), Expect = 1e-14
Identities = 40/105 (38%), Positives = 62/105 (59%)
Frame = +3
Query: 102 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHL 281
K + K +L Y K + AD VGS Q+Q+IR S+RG VLMGK TM+RK I+D
Sbjct: 9 KKLFIEKATKLFTTYDKMIVAEADFVGSSQLQKIRKSIRGIGAVLMGKKTMIRKVIRDLA 68
Query: 282 ETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPG 416
++ P L+ L ++K N +F + ++ +V+ + +V APA+ G
Sbjct: 69 DSKPELDALNTYLKQNTCIIFCKDNIAEVKRVINTQRVGAPAKAG 113
>UniRef50_Q7QU12 Cluster: 60S acidic ribosomal protein P0; n=1;
Giardia lamblia ATCC 50803|Rep: 60S acidic ribosomal
protein P0 - Giardia lamblia ATCC 50803
Length = 326
Score = 75.4 bits (177), Expect = 5e-13
Identities = 44/111 (39%), Positives = 65/111 (58%)
Frame = +3
Query: 90 KATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAI 269
K + Y K+ + L EY K +V DNV S Q+ QIR LRG + +L GKNT++++ I
Sbjct: 9 KQARRQAYVAKLERCLTEYKKIVLVSVDNVRSFQIAQIRRLLRGKAELLAGKNTIIKRVI 68
Query: 270 KDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAI 422
+ L+ + L+ LLP+IK NV FVFT GD + + K +A A+ G +
Sbjct: 69 -NQLD-DDKLKNLLPYIKLNVAFVFTNGDTSAILKAFKKTKRKAAAKAGIV 117
>UniRef50_A0DDF2 Cluster: 60S acidic ribosomal protein P0; n=6;
Paramecium tetraurelia|Rep: 60S acidic ribosomal protein
P0 - Paramecium tetraurelia
Length = 323
Score = 74.1 bits (174), Expect = 1e-12
Identities = 45/134 (33%), Positives = 74/134 (55%), Gaps = 18/134 (13%)
Frame = +3
Query: 75 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQI-RISLRGHSIVLMGKNT 251
MG+++ K F KI +LL +Y + IVG NVGS+Q+Q I RI + ++++++GKNT
Sbjct: 1 MGKKETKDKKPTQFKKIYELLSKYTQVIIVGLANVGSKQVQDIRRILAKRNALLVIGKNT 60
Query: 252 MMRKAIKDHLETNP-----------------ALEKLLPHIKGNVGFVFTRGDLVDVRDKL 380
+ +K + ++ P L+ L + G VGF+FT + D++ +
Sbjct: 61 LFKKVLATRVQELPKEHEYYEDLAKFGSAIKELDALKNSVAGKVGFIFTDTPVFDLKPII 120
Query: 381 LENKVQAPARPGAI 422
ENKV+ PAR GA+
Sbjct: 121 EENKVETPARVGAV 134
>UniRef50_Q52H32 Cluster: 60S acidic ribosomal protein P0; n=4;
Euplotes|Rep: 60S acidic ribosomal protein P0 - Euplotes
minuta
Length = 333
Score = 72.1 bits (169), Expect = 4e-12
Identities = 40/134 (29%), Positives = 77/134 (57%), Gaps = 18/134 (13%)
Frame = +3
Query: 75 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGH-SIVLMGKNT 251
M +DK K+ +F ++ + D+Y + +V DN+ ++Q+ R LR + S++LMG+NT
Sbjct: 1 MAGKDKKAKKNEFFERVYNVFDKYTRALLVKCDNISARQIHACRKELRSNNSLMLMGENT 60
Query: 252 MMRKAIKDHL------ETN-----------PALEKLLPHIKGNVGFVFTRGDLVDVRDKL 380
+++ A++ + E++ P +E L+ +KGN+G +FT DL D++D +
Sbjct: 61 LIKAALQKRISKPIESESDFEERSKTWTPIPHMEPLVRLLKGNLGIIFTNHDLTDIKDII 120
Query: 381 LENKVQAPARPGAI 422
+ +APAR G++
Sbjct: 121 DRHTREAPARVGSV 134
>UniRef50_Q9U7P1 Cluster: 60S acidic ribosomal protein P0; n=1;
Eufolliculina uhligi|Rep: 60S acidic ribosomal protein
P0 - Eufolliculina uhligi
Length = 324
Score = 71.7 bits (168), Expect = 6e-12
Identities = 44/124 (35%), Positives = 69/124 (55%), Gaps = 17/124 (13%)
Frame = +3
Query: 102 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHL 281
K +Y+ K+ L++E P+ I A+NVGS+Q+Q +R LR + +L GKNT++R +K L
Sbjct: 3 KYDYWEKLWTLIEEAPRILICEANNVGSKQLQDLRRVLRNKATILFGKNTLIRAGLKHRL 62
Query: 282 -ETN----------------PALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPAR 410
E N P LE L+P ++GNV +F ++ +V + E+KV A A+
Sbjct: 63 TEPNAEDEDFEKRKNTWTPKPELEHLIPLLRGNVCLIFCHAEMGEVLSAVEESKVPAEAK 122
Query: 411 PGAI 422
G I
Sbjct: 123 AGTI 126
>UniRef50_Q16RH9 Cluster: Temporarily assignedprotein name protein;
n=2; Culicidae|Rep: Temporarily assignedprotein name
protein - Aedes aegypti (Yellowfever mosquito)
Length = 1309
Score = 70.1 bits (164), Expect = 2e-11
Identities = 32/46 (69%), Positives = 39/46 (84%)
Frame = +3
Query: 258 RKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKV 395
++AI+ HLE N L KLLPHIK VGFVFT+GDLV+VRDKL+E+KV
Sbjct: 692 QQAIRVHLEVNSDLRKLLPHIKSYVGFVFTKGDLVEVRDKLMESKV 737
>UniRef50_O94085 Cluster: Putative uncharacterized protein YLR339C;
n=5; Saccharomycetales|Rep: Putative uncharacterized
protein YLR339C - Saccharomyces cerevisiae (Baker's
yeast)
Length = 183
Score = 69.3 bits (162), Expect = 3e-11
Identities = 43/102 (42%), Positives = 50/102 (49%)
Frame = -3
Query: 418 APGRAGAWTLFSNSLSRTSTRSPRVKTKPTFPLM*GSSFSRAGFVSRWSLMAFLIMVFLP 239
AP AGA TL S VKTKPT PL G++FS++G + LMA L MVFLP
Sbjct: 38 APALAGAATLLETITFLISVNGSLVKTKPTLPLTKGNNFSKSGKSDKKPLMALLTMVFLP 97
Query: 238 MSTML*PRNEXXXXXXXCEPTLSAPTMKHFGYSSNSWMILTK 113
+ T P N E TLS PT YSS + L K
Sbjct: 98 IKTTALPLNSFLTSCICWEETLSTPTTNKDLYSSKYSLNLAK 139
>UniRef50_Q98S65 Cluster: 60S acidic ribosomal protein P0; n=1;
Guillardia theta|Rep: 60S acidic ribosomal protein P0 -
Guillardia theta (Cryptomonas phi)
Length = 297
Score = 67.7 bits (158), Expect = 9e-11
Identities = 32/107 (29%), Positives = 61/107 (57%)
Frame = +3
Query: 102 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHL 281
KS F K L ++ + +V +N+ S+Q+++ + L SI++ GKNT+++K ++D L
Sbjct: 9 KSLVFKKFNFLFSKFSRLIVVKIENLNSEQIKKCKRLLNNTSILITGKNTLIKKVLRDRL 68
Query: 282 ETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAI 422
+ + ++L I GNV F+FT D +++ L N + A+ G +
Sbjct: 69 KNSTLSNEILTKINGNVSFIFTNEDPFFIQEILKNNSLPTAAKIGQV 115
>UniRef50_Q22HK6 Cluster: 60S acidic ribosomal protein P0; n=2;
Tetrahymena thermophila|Rep: 60S acidic ribosomal
protein P0 - Tetrahymena thermophila SB210
Length = 324
Score = 67.7 bits (158), Expect = 9e-11
Identities = 42/128 (32%), Positives = 68/128 (53%), Gaps = 16/128 (12%)
Frame = +3
Query: 87 DKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKA 266
DK K + + +LL +Y + +NVGS Q+QQIR SL ++I+++GKNT++RKA
Sbjct: 7 DKKAKKDAFIRRFYELLSKYDSIALCTLENVGSLQLQQIRRSLGSNNIMVIGKNTVVRKA 66
Query: 267 IK---DHLETN-------------PALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQ 398
++ L T+ P L L+PH+K + +VF + ++ K+ V
Sbjct: 67 VQLKSADLPTDSKYDWYRQFGAPKPQLASLIPHLKNKIAYVFHNDPIFALKPKIESFVVP 126
Query: 399 APARPGAI 422
APAR G +
Sbjct: 127 APARVGTV 134
>UniRef50_A2EES5 Cluster: 60S acidic ribosomal protein P0; n=6;
Trichomonas vaginalis G3|Rep: 60S acidic ribosomal
protein P0 - Trichomonas vaginalis G3
Length = 318
Score = 65.7 bits (153), Expect = 4e-10
Identities = 36/108 (33%), Positives = 58/108 (53%), Gaps = 1/108 (0%)
Frame = +3
Query: 102 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSI-VLMGKNTMMRKAIKDH 278
K +Y K+ L +Y K +V + NV + Q+ IR L H VL GKN++MR+A+
Sbjct: 11 KLDYVTKLHALFRKYHKVVVVTSMNVTANQLLNIRAGLAEHGCEVLFGKNSLMRRAVDQL 70
Query: 279 LETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAI 422
E P + +L H+ G +FT G+ ++D + N + + A+ GAI
Sbjct: 71 KEELPGIRQLEEHLYHGAGLIFTNGNFKAIKDVIDANCLGSAAKVGAI 118
>UniRef50_Q8SRJ7 Cluster: 60S ACIDIC RIBOSOMAL PROTEIN P0; n=1;
Encephalitozoon cuniculi|Rep: 60S ACIDIC RIBOSOMAL
PROTEIN P0 - Encephalitozoon cuniculi
Length = 290
Score = 61.3 bits (142), Expect = 8e-09
Identities = 38/121 (31%), Positives = 66/121 (54%)
Frame = +3
Query: 60 FTQSKMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLM 239
F M R+D K + + +L + Y + +V +NV S Q++ I+ G++ +LM
Sbjct: 20 FFHPGMTRKDAKERKELTYERARKLFETYSRFALVKIENVVSTQLKDIKRQWGGNAELLM 79
Query: 240 GKNTMMRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGA 419
GKN+ +R+AI D P L + +KG+V FVF +G+ D++ + EN +A A+ G
Sbjct: 80 GKNSAIRRAIAD--LGKPELSGVYDLVKGDVCFVFFKGNARDIKKAIDENVREACAKVGN 137
Query: 420 I 422
+
Sbjct: 138 V 138
>UniRef50_P13553 Cluster: Acidic ribosomal protein P0 homolog; n=6;
Halobacteriaceae|Rep: Acidic ribosomal protein P0
homolog - Halobacterium salinarium (Halobacterium
halobium)
Length = 352
Score = 60.1 bits (139), Expect = 2e-08
Identities = 30/113 (26%), Positives = 57/113 (50%)
Frame = +3
Query: 84 EDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRK 263
E+ WK +++ LL+ Y +V + S+Q+Q +R L G + + M +NT++ +
Sbjct: 10 EEVPEWKRQEVAELVDLLETYDSVGVVNVTGIPSKQLQDMRRGLHGQAALRMSRNTLLVR 69
Query: 264 AIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAI 422
A++ E L+ L +++G VG V T + + +L +K AP G +
Sbjct: 70 ALE---EAGDGLDTLTEYVEGEVGLVATNDNPFGLYQQLENSKTPAPINAGEV 119
>UniRef50_Q6CW90 Cluster: Similarities with sp|O94085 Saccharomyces
cerevisiae YLR339CP; n=1; Kluyveromyces lactis|Rep:
Similarities with sp|O94085 Saccharomyces cerevisiae
YLR339CP - Kluyveromyces lactis (Yeast) (Candida
sphaerica)
Length = 309
Score = 56.0 bits (129), Expect = 3e-07
Identities = 28/71 (39%), Positives = 39/71 (54%)
Frame = -2
Query: 347 GEDKANISLDVRKQFFESWICFKMVLDGFPHHGVFAHEHNAVTTQ*NTDLLHLLRAYIVR 168
GED+ N++LD R+Q F W D HGV H+ N+ +Q +D +HLL +IV
Sbjct: 236 GEDETNVTLDERQQLFVVWEVRDETSDSSSDHGVLTHQDNSSASQVLSDFVHLLGRHIVN 295
Query: 167 THYETFWVFVQ 135
T+ E VF Q
Sbjct: 296 TNNEDRLVFFQ 306
>UniRef50_P26796 Cluster: 60S acidic ribosomal protein P0; n=12;
Trypanosomatidae|Rep: 60S acidic ribosomal protein P0 -
Trypanosoma cruzi
Length = 323
Score = 56.0 bits (129), Expect = 3e-07
Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 9/116 (7%)
Frame = +3
Query: 102 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHL 281
K Y + L +Y + DNV SQQ+ +R LRG ++MGK T+ +K ++
Sbjct: 8 KREYEERFNGCLTKYGRVLFCLMDNVRSQQVHDVRRDLRGLGELVMGKKTLQKKIVERRA 67
Query: 282 ETN--PALEKLLPH-------IKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAI 422
E A +KLL + + GN +FT ++ + L +++VQAPAR GAI
Sbjct: 68 EDKKASAYDKLLYNTCIEKKLLCGNTALIFTNEEIPVITAVLDKHRVQAPARVGAI 123
>UniRef50_O74109 Cluster: Acidic ribosomal protein P0 homolog; n=8;
Euryarchaeota|Rep: Acidic ribosomal protein P0 homolog -
Pyrococcus horikoshii
Length = 342
Score = 53.2 bits (122), Expect = 2e-06
Identities = 32/113 (28%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Frame = +3
Query: 93 ATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVL-MGKNTMMRKAI 269
A WK ++ +L+ YP +V ++ + + Q+R +R + +L + +NT++ AI
Sbjct: 5 AEWKKKEVEELAKLIKSYPVIALVDVSSMPAYPLSQMRRLIRENGGLLRVSRNTLIELAI 64
Query: 270 KDHLET--NPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAI 422
K + P LEKL+ +I G + T + + L +N+ APA+PGA+
Sbjct: 65 KKAAKELGKPELEKLVEYIDRGAGILVTNMNPFKLYKFLQQNRQPAPAKPGAV 117
>UniRef50_Q7R447 Cluster: GLP_254_32992_33747; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_254_32992_33747 - Giardia lamblia
ATCC 50803
Length = 251
Score = 48.8 bits (111), Expect = 5e-05
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Frame = +3
Query: 102 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHL 281
K +I + D Y +++ + N+ S QQ+R S++G++ + MGKN +MR A+
Sbjct: 33 KQEIIKQIREAFDTYDTVYVIDSHNMTSSSWQQLRTSMKGYARIFMGKNQLMRYALGKTE 92
Query: 282 ETNPALE--KLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAI 422
E + + +L +KG G +FT VR L AR G +
Sbjct: 93 EESYRTKTWQLGRLLKGMTGLLFTSAPEEKVRSALASVARPCLARGGDV 141
>UniRef50_A3CSJ7 Cluster: Ribosomal protein L10; n=4;
Methanomicrobiales|Rep: Ribosomal protein L10 -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 346
Score = 47.6 bits (108), Expect = 1e-04
Identities = 29/106 (27%), Positives = 54/106 (50%)
Frame = +3
Query: 99 WKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDH 278
WK + +I + ++E+ +V + + Q+QQIR +LRG + V M +NT++ A+
Sbjct: 11 WKKDEVEEIKRGIEEHTLVGVVDMYGIPASQVQQIRRNLRGTARVKMARNTLIEHALN-- 68
Query: 279 LETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPG 416
E ++ L H +G +FT + + L + K + A+PG
Sbjct: 69 -ELGGSVATLNDHAEGQSALIFTNENPFKLFKLLEKTKTKMAAKPG 113
>UniRef50_Q3LWA7 Cluster: Ribosomal protein L10; n=1; Bigelowiella
natans|Rep: Ribosomal protein L10 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 251
Score = 47.2 bits (107), Expect = 1e-04
Identities = 23/80 (28%), Positives = 43/80 (53%)
Frame = +3
Query: 120 KIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHLETNPAL 299
K I LL+ Y IV +N+ S+Q+ IR LRG S +++GK + + ++++
Sbjct: 11 KFISLLNSYDTMVIVNMNNIRSKQIHDIRKHLRGTSEIVVGKKSFLSYLLQNNKLEMSRW 70
Query: 300 EKLLPHIKGNVGFVFTRGDL 359
+ ++ N+G +FT +L
Sbjct: 71 MSVKEYLSDNIGLIFTNSNL 90
>UniRef50_A5BWW8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 208
Score = 47.2 bits (107), Expect = 1e-04
Identities = 21/45 (46%), Positives = 31/45 (68%)
Frame = +3
Query: 288 NPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAI 422
NP L+P + GNVG +FT+GDL +V +++ + KV APAR G +
Sbjct: 15 NPVFLNLVPLLVGNVGPIFTKGDLKEVDEEVAKYKVGAPARTGLV 59
>UniRef50_Q7S302 Cluster: mRNA turnover protein 4 homolog; n=17;
Ascomycota|Rep: mRNA turnover protein 4 homolog -
Neurospora crassa
Length = 252
Score = 47.2 bits (107), Expect = 1e-04
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 2/109 (1%)
Frame = +3
Query: 102 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHL 281
K F I + + Y CF+ DN+ + ++ +R L I GK + +A+
Sbjct: 23 KEKLFENIRECIPNYQHCFVFSIDNMRNNYLKDVRKELNDCRI-FFGKTKLTARALGTTP 81
Query: 282 ETNPA--LEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAI 422
E A L+KL ++ G+VG +FT D +++D + AR G++
Sbjct: 82 EDAQADGLDKLSKYLSGSVGLIFTNRDPSEIKDYFVNLTQVDFARAGSV 130
>UniRef50_Q2Y4X9 Cluster: Acidic ribosomal protein P0; n=1;
uncultured archaeon|Rep: Acidic ribosomal protein P0 -
uncultured archaeon
Length = 313
Score = 46.8 bits (106), Expect = 2e-04
Identities = 27/108 (25%), Positives = 50/108 (46%)
Frame = +3
Query: 99 WKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDH 278
WK I LL Y + +GS+Q+Q+IR RG +++ + KN+M+ ++
Sbjct: 11 WKEEQVASINSLLGSYDTIGLAKIRGLGSKQLQRIRKEFRGDALLKVSKNSMIARSF--- 67
Query: 279 LETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAI 422
+ ++ I + +FT D + L + K+ AP + GA+
Sbjct: 68 --GGSGMNDMVDFIDDQMALIFTDLDAFALYKVLEKGKIPAPIKAGAV 113
>UniRef50_P15826 Cluster: Acidic ribosomal protein P0 homolog; n=6;
Methanococcus|Rep: Acidic ribosomal protein P0 homolog -
Methanococcus vannielii
Length = 336
Score = 46.8 bits (106), Expect = 2e-04
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 2/112 (1%)
Frame = +3
Query: 93 ATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIK 272
A WK + +LL ++ V + Q+Q+IR +R + M +NT++++A++
Sbjct: 11 APWKIEEVNALKELLKSANVIALIDMMEVPAVQLQEIRDKIRDQMTLKMSRNTLIKRAVE 70
Query: 273 DHLET--NPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAI 422
+ E NP KL+ ++ V T + + L E+K AP + GAI
Sbjct: 71 EVAEETGNPEFAKLVDYLDKGAAIVVTEMNPFKLFKTLEESKSPAPIKGGAI 122
>UniRef50_Q5BY73 Cluster: SJCHGC01801 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC01801 protein - Schistosoma
japonicum (Blood fluke)
Length = 236
Score = 46.4 bits (105), Expect = 2e-04
Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 2/108 (1%)
Frame = +3
Query: 102 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAI-KDH 278
K K+ Q LDEY + ++V N +Q++ +IR ++ + L G N + A+ K H
Sbjct: 17 KKQDVAKVRQYLDEYKRVYVVTLHNPRTQKVSEIRKNMPDIKL-LFGINKVTVWALGKTH 75
Query: 279 LET-NPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGA 419
++ P L L ++KG +FT+ ++R++L + RPGA
Sbjct: 76 KDSYRPKLHHLCKYLKGQCALLFTKSSPSELREQLDAFRSAEYCRPGA 123
>UniRef50_Q8ZTT3 Cluster: Acidic ribosomal protein P0 homolog; n=4;
Pyrobaculum|Rep: Acidic ribosomal protein P0 homolog -
Pyrobaculum aerophilum
Length = 345
Score = 46.4 bits (105), Expect = 2e-04
Identities = 27/96 (28%), Positives = 49/96 (51%)
Frame = +3
Query: 129 QLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHLETNPALEKL 308
+LL +YP F+ + S+ + + R LR + ++ + K T+ + A PA ++
Sbjct: 29 ELLQKYPYVFLFDLHGLSSRILHEYRYRLRRYGVIKIIKPTLFKIAFTKVYGGIPA--EI 86
Query: 309 LPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPG 416
++G VGF FT + +V + EN V+ A+PG
Sbjct: 87 AEKVRGEVGFFFTSFNPAEVIKIVAENSVRRAAQPG 122
>UniRef50_A5C7V3 Cluster: Putative uncharacterized protein; n=2;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 742
Score = 45.6 bits (103), Expect = 4e-04
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Frame = +3
Query: 180 GSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHLET--NPALEKLLPHIKGNVGFVFTRG 353
G + + R +V + K + + + H E NP L+P + GNVG + T+G
Sbjct: 574 GGHSFYFLGLVFRVSFLVWLPKRLFSQHSSRLHAEKTGNPVFLNLVPLLVGNVGLISTKG 633
Query: 354 DLVDVRDKLLENKVQAPARPGAI 422
DL +V ++ + KV APAR G +
Sbjct: 634 DLKEVDKEVAKYKVGAPARAGLV 656
>UniRef50_Q2NEW2 Cluster: 50S ribosomal protein L10P; n=1;
Methanosphaera stadtmanae DSM 3091|Rep: 50S ribosomal
protein L10P - Methanosphaera stadtmanae (strain DSM
3091)
Length = 332
Score = 45.6 bits (103), Expect = 4e-04
Identities = 27/110 (24%), Positives = 58/110 (52%)
Frame = +3
Query: 93 ATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIK 272
A WK ++ L + + IV ++ ++Q+Q +R SL ++I+ M + ++ A++
Sbjct: 5 ADWKKEKVAELEDLTNSHEIIGIVNLADIPAKQLQTMRKSLGDNAILKMSRKNFIKIALE 64
Query: 273 DHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAI 422
+ +E L +++G VFT+ + + L ++K +APA+ G+I
Sbjct: 65 N--SDKEEVEGLADYLEGQPAMVFTKMNPFKLFKILEDSKTEAPAKAGSI 112
>UniRef50_A3H9G5 Cluster: Ribosomal protein L10; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein L10 -
Caldivirga maquilingensis IC-167
Length = 303
Score = 45.2 bits (102), Expect = 6e-04
Identities = 24/108 (22%), Positives = 54/108 (50%)
Frame = +3
Query: 99 WKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDH 278
WK ++ +L+ ++ I + + + Q R LRGH +V + +N + A++
Sbjct: 21 WKVKVLKELEELIKKHSVIMIFDLRELPASMLHQYRRVLRGHGVVKVFRNKLFLIALR-R 79
Query: 279 LETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAI 422
+ + ++ ++ G GF+FT + D+ +++N V+ A+PG +
Sbjct: 80 IYGDSVNAEIEKYLSGENGFIFTNENPFDLYRIIVDNSVRRYAKPGDV 127
>UniRef50_A7Q681 Cluster: Chromosome undetermined scaffold_55, whole
genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_55, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 223
Score = 44.4 bits (100), Expect = 0.001
Identities = 24/66 (36%), Positives = 39/66 (59%)
Frame = +3
Query: 225 SIVLMGKNTMMRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAP 404
S+ M K+++ +A K NP L+P + GNVG +FT+GDL + +++ + KV AP
Sbjct: 38 SVFAMVKHSIRLRAEKTG---NPVFLNLVPLLVGNVGPIFTKGDLKEADEEVAKYKVGAP 94
Query: 405 ARPGAI 422
A G +
Sbjct: 95 AHTGLV 100
>UniRef50_Q7K1Q7 Cluster: LD47064p; n=7; Endopterygota|Rep: LD47064p
- Drosophila melanogaster (Fruit fly)
Length = 256
Score = 43.6 bits (98), Expect = 0.002
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Frame = +3
Query: 99 WKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAI--K 272
WK I + +YP F+ N+ + ++ +R L+ +S + GKN +M+ +
Sbjct: 22 WKQRIVDDIRFCVGKYPNIFVFQVQNMRNSLLKDLRQELKKNSRFIFGKNRVMQIGLGRT 81
Query: 273 DHLETNPALEKLLPHIKGNVGFVFT 347
E P L KL + G VG +FT
Sbjct: 82 KSEEVEPELHKLSKRLTGQVGLLFT 106
>UniRef50_Q4Q0U9 Cluster: 60S acidic ribosomal protein, putative;
n=5; Trypanosomatidae|Rep: 60S acidic ribosomal protein,
putative - Leishmania major
Length = 227
Score = 41.5 bits (93), Expect = 0.007
Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Frame = +3
Query: 63 TQSKMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMG 242
TQ+K REDK +I + L++Y + N+ + +QQIR G S + +G
Sbjct: 15 TQAKT-REDK----DKLIERIREALEDYSDVYTFQLHNIRTNILQQIREERAGDSRIFLG 69
Query: 243 KNTMMRKAIKDHLET--NPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPG 416
N +M AI E+ L KL P + G G +FT +V++ AR G
Sbjct: 70 NNKVMMIAIGRDEESAQRQNLHKLSPFLTGLCGLLFTNLSKKEVKEYFATVGAPVYARTG 129
>UniRef50_P96039 Cluster: Acidic ribosomal protein P0 homolog; n=4;
Sulfolobaceae|Rep: Acidic ribosomal protein P0 homolog -
Sulfolobus solfataricus
Length = 338
Score = 40.7 bits (91), Expect = 0.012
Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Frame = +3
Query: 93 ATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIK 272
A+WK ++ +L+ I + + ++ +IR LRG + + + KNT+ + A K
Sbjct: 14 ASWKLEEVKELTELIKNSNTILIGNLEGFPADKLHEIRKKLRGKATIKVTKNTLFKIAAK 73
Query: 273 DHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLEN-KVQAPARPG 416
+ +EKL ++ G F+FT+ D + + EN K++ A PG
Sbjct: 74 N---AGIDIEKLEQYLTGPNVFIFTK-DNPFITNMFFENYKLRRYAMPG 118
>UniRef50_A4S8Z4 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 255
Score = 39.9 bits (89), Expect = 0.021
Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Frame = +3
Query: 63 TQSKMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMG 242
TQ+K ++D+ WKS ++ L E ++ +N+ + +++R + + +G
Sbjct: 13 TQTK--KKDRE-WKSTLIERVRDALSERSSVYVFKYENMRNGTFKEMRAATEATTTFFVG 69
Query: 243 KNTMMRKAI-KD-HLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPG 416
N ++R A+ +D E + L +KG+ G +FT DV V+ AR G
Sbjct: 70 SNKVLRVALGRDAESEASEGAATLGARVKGDCGVMFTNLSREDVESVFERFAVKDYARTG 129
Query: 417 AI 422
A+
Sbjct: 130 AL 131
>UniRef50_UPI0000ECA2B0 Cluster: mRNA turnover protein 4 homolog.;
n=3; Gallus gallus|Rep: mRNA turnover protein 4 homolog.
- Gallus gallus
Length = 249
Score = 39.5 bits (88), Expect = 0.028
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Frame = +3
Query: 102 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAI--KD 275
K ++ + +D Y FI N+ + +++ +R + + HS + GKN +M A+ +
Sbjct: 30 KQALIAELRRCVDTYKHIFIFSVANMRNNKLKDVRNAWK-HSRIFFGKNKVMMVALGREP 88
Query: 276 HLETNPALEKLLPHIKGNVGFVFT 347
E L ++ H++G VG +FT
Sbjct: 89 SSEYRENLHQVSKHLRGEVGLLFT 112
>UniRef50_A7PSP2 Cluster: Chromosome chr6 scaffold_28, whole genome
shotgun sequence; n=3; Vitis vinifera|Rep: Chromosome
chr6 scaffold_28, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 105
Score = 37.9 bits (84), Expect = 0.087
Identities = 20/43 (46%), Positives = 25/43 (58%)
Frame = -3
Query: 415 PGRAGAWTLFSNSLSRTSTRSPRVKTKPTFPLM*GSSFSRAGF 287
P RAGA TL+ + S TS +SP VK PT P G+ + GF
Sbjct: 32 PVRAGAPTLYLATSSSTSFKSPFVKIGPTLPTRRGTRLRKTGF 74
>UniRef50_Q4PHU5 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 315
Score = 37.5 bits (83), Expect = 0.11
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Frame = +3
Query: 81 REDKATW--KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 254
R DK T K+N K+ EYP +I+G ++ + ++++R +G S + GK +
Sbjct: 14 RTDKKTKEDKANLIDKVRDAAQEYPYVWILGHHSMRNNYLKEVRDLWKG-SKIFFGKLKV 72
Query: 255 MRKAI--KDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRD 374
+ A+ + E + + + G+VG +FT +V D
Sbjct: 73 LALALGMTEEEEVRTGISGISQRLSGDVGLLFTESPPAEVID 114
>UniRef50_Q19302 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 220
Score = 36.7 bits (81), Expect = 0.20
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Frame = +3
Query: 69 SKMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKN 248
+K+ ++ K T K+N ++ +D+Y FI N+ S + IR + +S GKN
Sbjct: 13 TKVKKKTKDT-KNNLVNEVRASVDQYKNLFIFTIANMRSTRFIAIRQKYKENSRFFFGKN 71
Query: 249 TMMRKAIKDHLETNPA--LEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAI 422
++ A+ A L K +KG G +FT +V + E + AR G +
Sbjct: 72 NVISIALGKQKSDEYANQLHKASAILKGQCGLMFTNMSKKEVEAEFSEASEEDYARVGDV 131
>UniRef50_A7DRL3 Cluster: Ribosomal protein L10; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L10
- Candidatus Nitrosopumilus maritimus SCM1
Length = 288
Score = 35.1 bits (77), Expect = 0.61
Identities = 25/107 (23%), Positives = 51/107 (47%)
Frame = +3
Query: 102 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHL 281
K+ + ++ +L +Y I+ + V S Q+ +R +L+ K+ + +KA+++
Sbjct: 12 KTQMYQQLQELPKKYKVMAIIKMNKVRSTQILPLRKTLKDDVEFFSVKDKVAQKALEN-- 69
Query: 282 ETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAI 422
P ++ ++ KG V +FT + L +NK+ AR G I
Sbjct: 70 SDIPGMKDMIGEFKGQVMIMFTNMSPFKLNVLLAKNKIMMMARGGDI 116
>UniRef50_O28781 Cluster: Acidic ribosomal protein P0 homolog; n=1;
Archaeoglobus fulgidus|Rep: Acidic ribosomal protein P0
homolog - Archaeoglobus fulgidus
Length = 339
Score = 34.7 bits (76), Expect = 0.81
Identities = 25/101 (24%), Positives = 50/101 (49%)
Frame = +3
Query: 120 KIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHLETNPAL 299
+I +++ P IV NV + QMQ+IR RG + + + KNT++ +A+ D L +
Sbjct: 18 EIKRMISSKPVVAIVSFRNVPAGQMQKIRREFRGKAEIKVVKNTLLERAL-DALGGD--Y 74
Query: 300 EKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAI 422
KL ++ + + + + + + KV +P +P +
Sbjct: 75 LKLKDYLGDQIAIITADENPFRLFRMIEDTKVPSPLKPNQV 115
>UniRef50_UPI000150A24A Cluster: hypothetical protein
TTHERM_00500880; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00500880 - Tetrahymena
thermophila SB210
Length = 415
Score = 34.3 bits (75), Expect = 1.1
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Frame = -2
Query: 209 NTDLLHLLRAYIVRTHYETFWVFVQQ---LDDFNEVIGLPGSLVLPTHLGLSEVGTSEKF 39
N DLL LL AY + H+E ++ + Q LDD N+V L T L ++EV S+ F
Sbjct: 327 NLDLLILLFAYPTKEHFERKFISLSQKNRLDDLNQV-----KQHLCTSLKVTEVDYSKNF 381
Query: 38 KDKTNTH 18
+ N H
Sbjct: 382 NNYKNYH 388
>UniRef50_Q0W051 Cluster: 50S ribosomal protein L10E; n=1;
uncultured methanogenic archaeon RC-I|Rep: 50S ribosomal
protein L10E - Uncultured methanogenic archaeon RC-I
Length = 304
Score = 33.9 bits (74), Expect = 1.4
Identities = 26/108 (24%), Positives = 48/108 (44%)
Frame = +3
Query: 99 WKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDH 278
WK + KI+ + + IV V + +Q++R +L G + M +NT+ A D
Sbjct: 16 WKKDEIKKIVDGVHSHKVVGIVDVRGVPADSLQKMRRNLLGKVEMRMVRNTLSTIAF-DS 74
Query: 279 LETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAI 422
L ++L ++ G + V+T + + L K + A+ G I
Sbjct: 75 LPEGEKAKELAKYVDGQMLIVYTNDNPFKLYKLLNATKSKRAAKGGDI 122
>UniRef50_Q58J68 Cluster: Mitochondrial SBP40; n=1; Solanum
tuberosum|Rep: Mitochondrial SBP40 - Solanum tuberosum
(Potato)
Length = 387
Score = 33.1 bits (72), Expect = 2.5
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +3
Query: 129 QLLDEYPKCFIVGADNVGSQQMQQIRISLRGH--SIVLMGKNTMMRKAIKDH 278
+ +DEY CF + A+NV Q + +SL+G+ S+ GKN ++ + H
Sbjct: 166 EFMDEYQSCFHIVAENVNFVQGLKRNVSLKGNVKSVYPKGKNFVLDENDNQH 217
>UniRef50_Q4TAP6 Cluster: Chromosome undetermined SCAF7271, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF7271,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 145
Score = 32.7 bits (71), Expect = 3.3
Identities = 15/28 (53%), Positives = 22/28 (78%), Gaps = 1/28 (3%)
Frame = +1
Query: 325 EMLALS-SPVEILLMCVINCWRTKSKPR 405
+ LAL+ +PV++LL CV+ CW T S+PR
Sbjct: 74 QALALALAPVQLLLACVLTCW-TGSRPR 100
>UniRef50_A6C829 Cluster: Putative uncharacterized protein; n=1;
Planctomyces maris DSM 8797|Rep: Putative
uncharacterized protein - Planctomyces maris DSM 8797
Length = 373
Score = 31.9 bits (69), Expect = 5.7
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -1
Query: 267 WLSSSWCFCP*AQCCDHAMKYGSVASVASLHCPHPL*NILGI 142
+ S C C QC M++G ++ V +LH P P+ I GI
Sbjct: 279 YYSMPHCLC---QCMPEMMRFGEMSDVVALHAPRPVLLINGI 317
>UniRef50_Q8IDM7 Cluster: DNA topoisomerase III, putative; n=2;
Plasmodium|Rep: DNA topoisomerase III, putative -
Plasmodium falciparum (isolate 3D7)
Length = 710
Score = 31.5 bits (68), Expect = 7.5
Identities = 19/58 (32%), Positives = 33/58 (56%)
Frame = -2
Query: 206 TDLLHLLRAYIVRTHYETFWVFVQQLDDFNEVIGLPGSLVLPTHLGLSEVGTSEKFKD 33
++LL L+ + + T T ++ + N VI SL +PT+LG++ V + +KFKD
Sbjct: 584 SNLLTLMDKFSIGTD-ATMHEHIENIQKRNYVIKNSKSLFIPTNLGIALVQSYKKFKD 640
>UniRef50_UPI00005874CE Cluster: PREDICTED: similar to
OTTHUMP00000029908; n=2; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to OTTHUMP00000029908
- Strongylocentrotus purpuratus
Length = 379
Score = 31.1 bits (67), Expect = 9.9
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +3
Query: 246 NTMMRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKL 380
N M+K I+ H+E N ALE ++ +K +V + T + DVR ++
Sbjct: 307 NITMKKEIEGHIEENEALETIIQQLKEDVKSMST-DPISDVRKQM 350
>UniRef50_Q7NAE7 Cluster: PutA; n=1; Mycoplasma gallisepticum|Rep:
PutA - Mycoplasma gallisepticum
Length = 476
Score = 31.1 bits (67), Expect = 9.9
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Frame = +3
Query: 141 EYPKCFIVGADNVGSQQMQQ-------IRISLRGHSIVLMGKNTMMRKAIKDHL 281
+Y F G+ NVG + MQQ + + L G S ++ NT + KA+K L
Sbjct: 203 KYDHIFFTGSSNVGKKVMQQAATHLTPVTLELGGKSPCIVDTNTDLEKAVKSFL 256
>UniRef50_Q3BXL0 Cluster: TonB-dependent outer membrane receptor
precursor; n=10; Xanthomonas|Rep: TonB-dependent outer
membrane receptor precursor - Xanthomonas campestris pv.
vesicatoria (strain 85-10)
Length = 889
Score = 31.1 bits (67), Expect = 9.9
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +3
Query: 51 SPYFTQSKMGREDKATWKSNYFVKIIQLLDEYPKCFIVGAD-NVGSQQMQQIRISLRGHS 227
SPY+ Q K W+S YF +I +L + D + G Q +++R++L +
Sbjct: 796 SPYYEQGKWSARVNLGWRSEYFTQIGRLNGQQMTDAFTQVDASFGYQATERLRVALEATN 855
Query: 228 IV 233
++
Sbjct: 856 LL 857
>UniRef50_A6D6W3 Cluster: Putative uncharacterized protein; n=1;
Vibrio shilonii AK1|Rep: Putative uncharacterized
protein - Vibrio shilonii AK1
Length = 336
Score = 31.1 bits (67), Expect = 9.9
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +3
Query: 126 IQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHLETNP 293
+ L++ YP F+VG+D VG+ QQ +S + + KN + A ++ L+ P
Sbjct: 278 LALIEAYPDRFMVGSDVVGAFGYQQTALSTWHPILSALPKNIADKMAYQNMLDVLP 333
>UniRef50_A5BI07 Cluster: Putative uncharacterized protein; n=6;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 1803
Score = 31.1 bits (67), Expect = 9.9
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = -2
Query: 410 TSRGLDFVLQQFITHINKISTGEDKANISLDVRKQFFESWICFKMVLDGFPHHG 249
T+ +F+ + F TH +N S ++F+E W + ++ FPHHG
Sbjct: 120 TNLQAEFLKKFFPTHRTN-GLKRQISNFSAKENEKFYECWERYMEAINAFPHHG 172
>UniRef50_Q4PEA5 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 466
Score = 31.1 bits (67), Expect = 9.9
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -2
Query: 143 FVQQLDDFNEVIGLPGSLVLPTHLGLSEVGTSEKFKDKTNTHRPLPR 3
F +++DD + V+ SLV P L EV E + N H P+PR
Sbjct: 93 FFRRMDDRHSVLLKEKSLVFPNDPSLGEVKVEE--EGNANLHAPIPR 137
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 497,343,888
Number of Sequences: 1657284
Number of extensions: 10247380
Number of successful extensions: 29075
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 28213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29050
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 20232460752
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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