Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_F18
         (426 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...   116   1e-27
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar...    26   2.8  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   3.7  
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S...    25   4.9  
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom...    25   4.9  
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    25   4.9  
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    24   8.6  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    24   8.6  
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||...    24   8.6  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score =  116 bits (280), Expect = 1e-27
 Identities = 53/107 (49%), Positives = 75/107 (70%)
 Frame = +3

Query: 102 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHL 281
           K+ YF K+  L ++Y   F+V  DNV SQQM  +R  LRG + ++MGKNTM+R+A++  +
Sbjct: 8   KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGII 67

Query: 282 ETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAI 422
              P LE+LLP ++GNVGFVFT  DL +VR+ ++ N + APARP AI
Sbjct: 68  NDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAI 114


>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
           Byr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 54  PYFTQSKMGREDKATWKSNY 113
           PYF Q+ M   D A+W SN+
Sbjct: 318 PYFQQALMINVDLASWASNF 337


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 13   GLCVFVLSLNFSEVPTSLNPRWVGRTRLPGS 105
            GLC   + L+   +  ++NP ++GR +LP +
Sbjct: 1971 GLCQSPILLDAPTIFVTMNPGYLGRFKLPSN 2001


>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 660

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 228 IVLMGKNTMMRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLV 362
           I L+G N ++     DH++ +P ++   P+I      V ++GDLV
Sbjct: 401 IPLLGMNKVILAG--DHMQLSPNVQSKRPYISMFERLVKSQGDLV 443


>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 222 HSIVLMGKNTMMRKAIKDHLE 284
           HS++   KNT   KA+  HLE
Sbjct: 408 HSLLQKSKNTSSTKALTSHLE 428


>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 248 HHDEESHQGPS*NKSSSRKTASSHQG 325
           HH+ +     S   S+SRK A SH G
Sbjct: 431 HHNNDKRAHVSRRHSTSRKIAQSHTG 456


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -2

Query: 173 VRTHYET-FWVFVQQLDDFNEVIGLPGSLVLP 81
           V  H ET  +++VQ   + N+ + + GSL  P
Sbjct: 477 VAMHVETTLYIYVQSFQNANQTVSICGSLPEP 508


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 245 KHHDEESHQGPS*NKSSSRKTASSHQG 325
           KHH+ E H+GP  ++    K    H+G
Sbjct: 343 KHHELEEHEGPEHHRGPEDK--EHHKG 367


>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +2

Query: 329 CWLCLHPW 352
           CW+CL PW
Sbjct: 317 CWVCLGPW 324


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,040,780
Number of Sequences: 5004
Number of extensions: 42257
Number of successful extensions: 151
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)