Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_F18
(426 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical pr... 172 1e-43
U41264-4|AAA82424.1| 220|Caenorhabditis elegans Hypothetical pr... 37 0.007
Z77652-7|CAB01119.1| 341|Caenorhabditis elegans Hypothetical pr... 29 1.4
Z82266-17|CAJ80813.1| 446|Caenorhabditis elegans Hypothetical p... 28 3.2
Z82266-16|CAJ80812.1| 423|Caenorhabditis elegans Hypothetical p... 28 3.2
Z82266-15|CAD36491.1| 608|Caenorhabditis elegans Hypothetical p... 28 3.2
Z82266-14|CAD36490.1| 467|Caenorhabditis elegans Hypothetical p... 28 3.2
Z82266-10|CAJ80811.1| 331|Caenorhabditis elegans Hypothetical p... 28 3.2
Z68213-11|CAJ80817.1| 446|Caenorhabditis elegans Hypothetical p... 28 3.2
Z68213-10|CAJ80816.1| 423|Caenorhabditis elegans Hypothetical p... 28 3.2
Z68213-9|CAD37352.1| 608|Caenorhabditis elegans Hypothetical pr... 28 3.2
Z68213-8|CAA92439.3| 467|Caenorhabditis elegans Hypothetical pr... 28 3.2
AL117206-1|CAB60446.1| 644|Caenorhabditis elegans Hypothetical ... 27 4.3
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 27 5.6
Z81529-12|CAB04303.1| 492|Caenorhabditis elegans Hypothetical p... 27 7.4
AL023816-5|CAA19434.1| 492|Caenorhabditis elegans Hypothetical ... 27 7.4
AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical ... 27 7.4
X70833-1|CAA50181.1| 575|Caenorhabditis elegans Cytoplasmic int... 26 9.8
U80441-1|AAB37651.1| 647|Caenorhabditis elegans Hypothetical pr... 26 9.8
U41538-3|AAP31431.1| 142|Caenorhabditis elegans Hypothetical pr... 26 9.8
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 26 9.8
U29379-3|AAF99979.3| 558|Caenorhabditis elegans Intermediate fi... 26 9.8
>Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical
protein F25H2.10 protein.
Length = 312
Score = 172 bits (418), Expect = 1e-43
Identities = 75/116 (64%), Positives = 98/116 (84%)
Frame = +3
Query: 75 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 254
M RED++TWK+NYF K+++L +EYPKC +VG DNVGS+QMQ+IR ++RGH+ +LMGKNTM
Sbjct: 1 MVREDRSTWKANYFTKLVELFEEYPKCLLVGVDNVGSKQMQEIRQAMRGHAEILMGKNTM 60
Query: 255 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAI 422
+RKA++ HL NP+LEKLLPHI NVGFVFT+ DL ++R KLLEN+ APA+ GAI
Sbjct: 61 IRKALRGHLGKNPSLEKLLPHIVENVGFVFTKEDLGEIRSKLLENRKGAPAKAGAI 116
>U41264-4|AAA82424.1| 220|Caenorhabditis elegans Hypothetical
protein F10E7.5 protein.
Length = 220
Score = 36.7 bits (81), Expect = 0.007
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Frame = +3
Query: 69 SKMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKN 248
+K+ ++ K T K+N ++ +D+Y FI N+ S + IR + +S GKN
Sbjct: 13 TKVKKKTKDT-KNNLVNEVRASVDQYKNLFIFTIANMRSTRFIAIRQKYKENSRFFFGKN 71
Query: 249 TMMRKAIKDHLETNPA--LEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAI 422
++ A+ A L K +KG G +FT +V + E + AR G +
Sbjct: 72 NVISIALGKQKSDEYANQLHKASAILKGQCGLMFTNMSKKEVEAEFSEASEEDYARVGDV 131
>Z77652-7|CAB01119.1| 341|Caenorhabditis elegans Hypothetical
protein C06B3.10 protein.
Length = 341
Score = 29.1 bits (62), Expect = 1.4
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = -2
Query: 389 VLQQFITHI-NKISTGEDKANISLDVRKQFFESWICFKMVLDGFPHHGVFAHEHNAVTTQ 213
++ F+ HI + IS NIS++ Q I LD P+ + NA+ TQ
Sbjct: 254 IIPVFLMHIPSTISMCAAFTNISIEFISQILSCTISLYPALDPLPNFFIIKSYRNAI-TQ 312
Query: 212 *NTDLLHLL 186
TD L LL
Sbjct: 313 YLTDFLRLL 321
>Z82266-17|CAJ80813.1| 446|Caenorhabditis elegans Hypothetical
protein C01F6.6d protein.
Length = 446
Score = 27.9 bits (59), Expect = 3.2
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +2
Query: 224 QHCAHGQKHHDEESHQGPS--*NKSSSRKTASSHQG 325
+H H Q HH HQ PS N SS ASS G
Sbjct: 369 KHEQHSQTHHHHHQHQQPSPLSNGSSHGYAASSTSG 404
>Z82266-16|CAJ80812.1| 423|Caenorhabditis elegans Hypothetical
protein C01F6.6c protein.
Length = 423
Score = 27.9 bits (59), Expect = 3.2
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +2
Query: 224 QHCAHGQKHHDEESHQGPS--*NKSSSRKTASSHQG 325
+H H Q HH HQ PS N SS ASS G
Sbjct: 346 KHEQHSQTHHHHHQHQQPSPLSNGSSHGYAASSTSG 381
>Z82266-15|CAD36491.1| 608|Caenorhabditis elegans Hypothetical
protein C01F6.6b protein.
Length = 608
Score = 27.9 bits (59), Expect = 3.2
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +2
Query: 224 QHCAHGQKHHDEESHQGPS--*NKSSSRKTASSHQG 325
+H H Q HH HQ PS N SS ASS G
Sbjct: 531 KHEQHSQTHHHHHQHQQPSPLSNGSSHGYAASSTSG 566
>Z82266-14|CAD36490.1| 467|Caenorhabditis elegans Hypothetical
protein C01F6.6a protein.
Length = 467
Score = 27.9 bits (59), Expect = 3.2
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +2
Query: 224 QHCAHGQKHHDEESHQGPS--*NKSSSRKTASSHQG 325
+H H Q HH HQ PS N SS ASS G
Sbjct: 390 KHEQHSQTHHHHHQHQQPSPLSNGSSHGYAASSTSG 425
>Z82266-10|CAJ80811.1| 331|Caenorhabditis elegans Hypothetical
protein C01F6.6e protein.
Length = 331
Score = 27.9 bits (59), Expect = 3.2
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +2
Query: 224 QHCAHGQKHHDEESHQGPS--*NKSSSRKTASSHQG 325
+H H Q HH HQ PS N SS ASS G
Sbjct: 254 KHEQHSQTHHHHHQHQQPSPLSNGSSHGYAASSTSG 289
>Z68213-11|CAJ80817.1| 446|Caenorhabditis elegans Hypothetical
protein C01F6.6d protein.
Length = 446
Score = 27.9 bits (59), Expect = 3.2
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +2
Query: 224 QHCAHGQKHHDEESHQGPS--*NKSSSRKTASSHQG 325
+H H Q HH HQ PS N SS ASS G
Sbjct: 369 KHEQHSQTHHHHHQHQQPSPLSNGSSHGYAASSTSG 404
>Z68213-10|CAJ80816.1| 423|Caenorhabditis elegans Hypothetical
protein C01F6.6c protein.
Length = 423
Score = 27.9 bits (59), Expect = 3.2
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +2
Query: 224 QHCAHGQKHHDEESHQGPS--*NKSSSRKTASSHQG 325
+H H Q HH HQ PS N SS ASS G
Sbjct: 346 KHEQHSQTHHHHHQHQQPSPLSNGSSHGYAASSTSG 381
>Z68213-9|CAD37352.1| 608|Caenorhabditis elegans Hypothetical
protein C01F6.6b protein.
Length = 608
Score = 27.9 bits (59), Expect = 3.2
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +2
Query: 224 QHCAHGQKHHDEESHQGPS--*NKSSSRKTASSHQG 325
+H H Q HH HQ PS N SS ASS G
Sbjct: 531 KHEQHSQTHHHHHQHQQPSPLSNGSSHGYAASSTSG 566
>Z68213-8|CAA92439.3| 467|Caenorhabditis elegans Hypothetical
protein C01F6.6a protein.
Length = 467
Score = 27.9 bits (59), Expect = 3.2
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +2
Query: 224 QHCAHGQKHHDEESHQGPS--*NKSSSRKTASSHQG 325
+H H Q HH HQ PS N SS ASS G
Sbjct: 390 KHEQHSQTHHHHHQHQQPSPLSNGSSHGYAASSTSG 425
>AL117206-1|CAB60446.1| 644|Caenorhabditis elegans Hypothetical
protein Y67A10A.1 protein.
Length = 644
Score = 27.5 bits (58), Expect = 4.3
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = -2
Query: 392 FVLQQFITHINKISTGEDKANISLDVRKQFFESWICFKMVLDGFPH-HGVFAH--EHNAV 222
F++ +++ +I +DK ++ +E ++ +LD FP H F + H AV
Sbjct: 494 FIVARYMNNIKNPVQKDDKIVQQINETIAHYEKYVKKLYILDAFPEFHENFLNLFLHYAV 553
Query: 221 TTQ*NTDLLHL 189
T + D LHL
Sbjct: 554 TRPDDMDALHL 564
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 27.1 bits (57), Expect = 5.6
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 233 AHGQKHHDEESHQGPS*NKSSSRKTASS 316
+HG+KHH + + S + SSS ++SS
Sbjct: 329 SHGKKHHKKAASSSSSSSSSSSSSSSSS 356
>Z81529-12|CAB04303.1| 492|Caenorhabditis elegans Hypothetical
protein T05G11.1 protein.
Length = 492
Score = 26.6 bits (56), Expect = 7.4
Identities = 12/54 (22%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +3
Query: 153 CFIVGAD--NVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHLETNPALEKL 308
C G D + GS + + R + GH+ +L + + ++DH+++ ++K+
Sbjct: 181 CGFCGKDFFHEGSLREHRRRFHMTGHTCLLCNRQIPENETVRDHMKSQHNIKKV 234
>AL023816-5|CAA19434.1| 492|Caenorhabditis elegans Hypothetical
protein T05G11.1 protein.
Length = 492
Score = 26.6 bits (56), Expect = 7.4
Identities = 12/54 (22%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +3
Query: 153 CFIVGAD--NVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHLETNPALEKL 308
C G D + GS + + R + GH+ +L + + ++DH+++ ++K+
Sbjct: 181 CGFCGKDFFHEGSLREHRRRFHMTGHTCLLCNRQIPENETVRDHMKSQHNIKKV 234
>AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical
protein Y46B2A.3 protein.
Length = 1145
Score = 26.6 bits (56), Expect = 7.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 406 AGAWTLFSNSLSRTSTRSPRVKTKPT 329
A WT+ +N ++R TR P +PT
Sbjct: 202 AAGWTIRANGITRGQTRVPGTTREPT 227
>X70833-1|CAA50181.1| 575|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 575
Score = 26.2 bits (55), Expect = 9.8
Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Frame = +3
Query: 36 LKFLRSPYFTQSKMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISL 215
++ +RS Y S R D +W Y +K+ ++ + + + N ++++++R +L
Sbjct: 281 IREIRSEYDHVSNTTRTDIESW---YKLKVQEIHTQNSRNCL--EQNYAREEVKRLRTTL 335
Query: 216 ---RGHSIVLMGKNTMMRKAIKD 275
RG L G+N ++ K I+D
Sbjct: 336 GDMRGKMADLEGRNLLLEKQIED 358
>U80441-1|AAB37651.1| 647|Caenorhabditis elegans Hypothetical
protein F27C1.6 protein.
Length = 647
Score = 26.2 bits (55), Expect = 9.8
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 189 QMQQIRISLRGHSIVLMGKNTMMRKAIKDHLETNPALEKLL 311
+M RI RG S+ G+N ++ ++ H NP ++KLL
Sbjct: 240 EMDLQRIMERG-SLKHRGQNQKFKQMLEKHASRNPEVKKLL 279
>U41538-3|AAP31431.1| 142|Caenorhabditis elegans Hypothetical
protein R04E5.8b protein.
Length = 142
Score = 26.2 bits (55), Expect = 9.8
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +2
Query: 233 AHGQ-KHHDEESHQGPS*NKSSSRKTASSHQG 325
AH + +HH+ H GP N + R +H G
Sbjct: 63 AHNRGQHHNRGHHHGPPRNHNQDRNRHRNHDG 94
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical protein
R04E5.8a protein.
Length = 997
Score = 26.2 bits (55), Expect = 9.8
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +2
Query: 233 AHGQ-KHHDEESHQGPS*NKSSSRKTASSHQG 325
AH + +HH+ H GP N + R +H G
Sbjct: 907 AHNRGQHHNRGHHHGPPRNHNQDRNRHRNHDG 938
>U29379-3|AAF99979.3| 558|Caenorhabditis elegans Intermediate
filament, a protein 4 protein.
Length = 558
Score = 26.2 bits (55), Expect = 9.8
Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Frame = +3
Query: 36 LKFLRSPYFTQSKMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISL 215
++ +RS Y S R D +W Y +K+ ++ + + + N ++++++R +L
Sbjct: 264 IREIRSEYDHVSNTTRTDIESW---YKLKVQEIHTQNSRNCL--EQNYAREEVKRLRTTL 318
Query: 216 ---RGHSIVLMGKNTMMRKAIKD 275
RG L G+N ++ K I+D
Sbjct: 319 GDMRGKMADLEGRNLLLEKQIED 341
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,314,373
Number of Sequences: 27780
Number of extensions: 240088
Number of successful extensions: 705
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -