Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_F17
         (435 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   132   2e-31
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   129   1e-30
09_04_0594 - 18831011-18831360,18831562-18832111,18832364-188334...    30   0.71 
08_02_1300 + 25972496-25972582,25972664-25972723,25973786-259738...    28   3.8  
06_01_0820 + 6202348-6203313                                           27   6.6  

>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  132 bits (318), Expect = 2e-31
 Identities = 62/114 (54%), Positives = 76/114 (66%)
 Frame = +3

Query: 93  ATMSGGLDLLALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLSRTWEKX 272
           A   G    L+ +E+DV  MLAA  HLG +N +FQME YVYKRR DG ++INL +TWEK 
Sbjct: 3   AVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWEKL 62

Query: 273 XXXXXXXXXXEDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQI 434
                     E+P D+ V S+R +GQRAVLKFA +TGA  IAGR TPG FTNQ+
Sbjct: 63  QLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQL 116


>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  129 bits (311), Expect = 1e-30
 Identities = 63/112 (56%), Positives = 76/112 (67%), Gaps = 2/112 (1%)
 Frame = +3

Query: 105 GGLDLLALS--EEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLSRTWEKXXX 278
           GG    ALS  E+D+  MLAA  HLG +N +FQME YVYKRR DG ++INL +TWEK   
Sbjct: 5   GGAAARALSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQL 64

Query: 279 XXXXXXXXEDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQI 434
                   E+P D+ V S+R +GQRAVLKFA +TGA  IAGR TPG FTNQ+
Sbjct: 65  AARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQL 116


>09_04_0594 -
           18831011-18831360,18831562-18832111,18832364-18833406,
           18833496-18833760,18835194-18835340,18835431-18835511,
           18835626-18835804,18835935-18836093,18836269-18836398,
           18836935-18837094,18837337-18837419,18837865-18837915,
           18838035-18838151,18838273-18838359
          Length = 1133

 Score = 30.3 bits (65), Expect = 0.71
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +3

Query: 42  PFASQWHYTRLVVTLTNATMSGGLDLLALSEEDVTKMLAATTHLGAENVNFQMETY 209
           PF ++W   +     +  T + G   L   +ED+ K L+A  H   E +   MET+
Sbjct: 241 PFIAEWFRNKGHYIKSQVTAATGAIALMQLQEDLKKHLSAECHYTEEELEAYMETH 296


>08_02_1300 +
           25972496-25972582,25972664-25972723,25973786-25973868,
           25974120-25974166,25975194-25975352,25975466-25975644,
           25975738-25975818,25975903-25976046,25976246-25976347
          Length = 313

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/56 (25%), Positives = 25/56 (44%)
 Frame = +3

Query: 42  PFASQWHYTRLVVTLTNATMSGGLDLLALSEEDVTKMLAATTHLGAENVNFQMETY 209
           PF ++W   +     +  T + G   L   +ED+ K L+A  H   E +   M+ +
Sbjct: 124 PFVAEWFRDKGHFIKSQVTAAAGAIALMQLQEDLKKYLSAEGHYTEEELEMFMQNH 179


>06_01_0820 + 6202348-6203313
          Length = 321

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 42  PFASQWHYTRLVVTLTNATMSGG 110
           P A+QW  T   V L+NAT  GG
Sbjct: 91  PSAAQWWSTLATVYLSNATTGGG 113


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,874,447
Number of Sequences: 37544
Number of extensions: 227796
Number of successful extensions: 473
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)