Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_F17
(435 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z37983-1|CAA86061.1| 276|Caenorhabditis elegans Hypothetical pr... 142 1e-34
AC024810-18|ABC71796.1| 787|Caenorhabditis elegans Abnormal cel... 30 0.63
AB212859-1|BAE66674.1| 787|Caenorhabditis elegans COGC-1 protein. 30 0.63
Z35599-2|CAD91629.2| 584|Caenorhabditis elegans Hypothetical pr... 28 2.5
Z35599-1|CAA84659.2| 581|Caenorhabditis elegans Hypothetical pr... 28 2.5
U23412-5|AAK21467.2| 492|Caenorhabditis elegans Hypothetical pr... 27 4.4
U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical pr... 27 5.9
Z92973-3|CAB07491.1| 244|Caenorhabditis elegans Hypothetical pr... 27 7.8
Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical pr... 27 7.8
AC006712-7|AAK39318.2| 264|Caenorhabditis elegans Hypothetical ... 27 7.8
>Z37983-1|CAA86061.1| 276|Caenorhabditis elegans Hypothetical
protein B0393.1 protein.
Length = 276
Score = 142 bits (344), Expect = 1e-34
Identities = 66/112 (58%), Positives = 81/112 (72%)
Frame = +3
Query: 99 MSGGLDLLALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLSRTWEKXXX 278
MSGG AL+EEDV K+LA HLG+ N+NFQM+ YVYKRR DG ++IN+ +TWEK
Sbjct: 1 MSGGAAHSALTEEDVMKLLATQAHLGSTNLNFQMQQYVYKRRFDGPNIINVKKTWEKLLL 60
Query: 279 XXXXXXXXEDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQI 434
E+PADV V+S+R + QRA+LKFAAHTGAT I GRF+PG TNQI
Sbjct: 61 AARAIAAVENPADVVVVSARPYAQRALLKFAAHTGATAIFGRFSPGCLTNQI 112
>AC024810-18|ABC71796.1| 787|Caenorhabditis elegans Abnormal cell
migration protein 30 protein.
Length = 787
Score = 30.3 bits (65), Expect = 0.63
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +3
Query: 69 RLVVTLTNATMSGGLDLLALSEED-VTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVI 245
R+V T + LL +S D T LAA L ++++ +E Y+ KR TH+I
Sbjct: 144 RIVATRSELEFQNCSTLLDISRSDWATNQLAAIALLQGKDISQLLELYLEKRFEHVTHLI 203
Query: 246 NLSRT 260
S T
Sbjct: 204 EDSAT 208
>AB212859-1|BAE66674.1| 787|Caenorhabditis elegans COGC-1 protein.
Length = 787
Score = 30.3 bits (65), Expect = 0.63
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +3
Query: 69 RLVVTLTNATMSGGLDLLALSEED-VTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVI 245
R+V T + LL +S D T LAA L ++++ +E Y+ KR TH+I
Sbjct: 144 RIVATRSELEFQNCSTLLDISRSDWATNQLAAIALLQGKDISQLLELYLEKRFEHVTHLI 203
Query: 246 NLSRT 260
S T
Sbjct: 204 EDSAT 208
>Z35599-2|CAD91629.2| 584|Caenorhabditis elegans Hypothetical
protein F25F2.1b protein.
Length = 584
Score = 28.3 bits (60), Expect = 2.5
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 163 PPIWERKMLISRWRRTFINAVVTVRT 240
PP + RK+L + WR +++ VT+ T
Sbjct: 100 PPNFARKVLEAEWREMYVDPKVTIET 125
>Z35599-1|CAA84659.2| 581|Caenorhabditis elegans Hypothetical
protein F25F2.1a protein.
Length = 581
Score = 28.3 bits (60), Expect = 2.5
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 163 PPIWERKMLISRWRRTFINAVVTVRT 240
PP + RK+L + WR +++ VT+ T
Sbjct: 100 PPNFARKVLEAEWREMYVDPKVTIET 125
>U23412-5|AAK21467.2| 492|Caenorhabditis elegans Hypothetical
protein T10F2.4 protein.
Length = 492
Score = 27.5 bits (58), Expect = 4.4
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 303 EDPADVFVISSRAFGQRAVLKFAAHTGATPIA 398
EDP V +S F +R ++KF A G PI+
Sbjct: 13 EDPV-VSQVSGHIFDRRLIVKFIAENGTDPIS 43
>U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical protein
M03A8.2 protein.
Length = 2275
Score = 27.1 bits (57), Expect = 5.9
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 258 YAKD*LRAYRHHGVYKRTSPSGN*HFPLPNGWSPQA 151
+A D Y HH V ++ SPS N + G+SP A
Sbjct: 1838 WADDHDLTYTHHDVVRQESPSFNCNISPIKGYSPPA 1873
>Z92973-3|CAB07491.1| 244|Caenorhabditis elegans Hypothetical
protein Y6G8.3 protein.
Length = 244
Score = 26.6 bits (56), Expect = 7.8
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = -2
Query: 425 SKCTRSETSSNWCCASVGSKFKHSTLAKCT**DNKHISWILHGDNSTSSEYKLFPCTRKI 246
S+ R + + CAS G F+H+ N+H +LHG +E+ C RK+
Sbjct: 14 SELKRPDLRGKFICASCGQHFQHNASL------NRH-RRLLHG-----NEHTCMMCDRKL 61
Query: 245 NYVRTV 228
N T+
Sbjct: 62 NAKETI 67
>Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical protein
W02B8.2 protein.
Length = 1256
Score = 26.6 bits (56), Expect = 7.8
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -1
Query: 315 QLDPPRRQQHEQRVQAFPMYAKD*LRAYRHHGVY 214
+L PPRR + V A + A + L AY++HG++
Sbjct: 1115 KLMPPRRSDYP--VSAHAITANEILLAYQNHGIF 1146
>AC006712-7|AAK39318.2| 264|Caenorhabditis elegans Hypothetical
protein Y119C1B.9 protein.
Length = 264
Score = 26.6 bits (56), Expect = 7.8
Identities = 13/55 (23%), Positives = 27/55 (49%)
Frame = -2
Query: 317 ISWILHGDNSTSSEYKLFPCTRKINYVRTVTTAFINVRLHLEINIFRSQMGGRRK 153
I W+ +S +++++ FPC +K + + I V + E+ + +M G K
Sbjct: 74 IQWMFRPSDSVNAQWREFPCAKKEEH-KNCQKEEIIVESNCEVRMNSLKMSGTYK 127
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,492,755
Number of Sequences: 27780
Number of extensions: 178197
Number of successful extensions: 439
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -