Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_F17
         (435 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   2.0  
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      23   2.0  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   4.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   6.0  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   6.0  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 260 CTRKINYVRTVTTAFINVR 204
           C R  NY  ++T+AF N+R
Sbjct: 8   CLRWNNYQSSITSAFENLR 26


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 260 CTRKINYVRTVTTAFINVR 204
           C R  NY  ++T+AF N+R
Sbjct: 8   CLRWNNYQSSITSAFENLR 26


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 110 SSRHRCVCKSYD*TRIMP 57
           +S H C  K+ D T+IMP
Sbjct: 20  NSPHTCRTKNGDYTKIMP 37


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 203 LHLEINIFRSQMGGRRKHLSHI 138
           LHLE N  R   G   + LSH+
Sbjct: 847 LHLEDNRIRELKGFEFERLSHL 868


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +3

Query: 45  FASQWHYTRLVVTLTNATMSGGLDLLALSEEDVTKMLAATTHLGAENVNF 194
           FAS   YT   +   + T+  G+  +ALS   +T+ L  +  L + N+N+
Sbjct: 229 FASDPRYTTFTINGESFTLQSGIFGMALS--PLTQNLYYSA-LSSHNLNY 275


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,432
Number of Sequences: 438
Number of extensions: 2060
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)