Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_F13
         (427 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0BUZ6 Cluster: Chromosome undetermined scaffold_13, wh...    31   7.5  
UniRef50_UPI00006CB1D5 Cluster: hypothetical protein TTHERM_0030...    31   9.9  
UniRef50_A1BG05 Cluster: Putative uncharacterized protein; n=1; ...    31   9.9  
UniRef50_Q5CIQ7 Cluster: Zinc finger (C3HC4-type RING finger) pr...    31   9.9  

>UniRef50_A0BUZ6 Cluster: Chromosome undetermined scaffold_13, whole
           genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_13,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 170

 Score = 31.5 bits (68), Expect = 7.5
 Identities = 16/38 (42%), Positives = 25/38 (65%)
 Frame = -3

Query: 203 YISRHKVRTTQHGLSRRTWRPELYIIISFLSKPFYLNY 90
           YIS +K+R++ +GL ++      YI+  FLS+PFY  Y
Sbjct: 79  YISFYKIRSSFYGLLKK-----YYIVPIFLSQPFYNQY 111


>UniRef50_UPI00006CB1D5 Cluster: hypothetical protein TTHERM_00300660;
            n=1; Tetrahymena thermophila SB210|Rep: hypothetical
            protein TTHERM_00300660 - Tetrahymena thermophila SB210
          Length = 1262

 Score = 31.1 bits (67), Expect = 9.9
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = -3

Query: 215  YYV*YISRHKVRTTQHGLSRRTWRPELYIIISFLSKPFYLNY*NTL*KSYKYIF 54
            Y   YI  +K+   Q+ +    W   +  ++SFL K FY+N  +   K+YK +F
Sbjct: 1201 YLFLYIQENKIE--QYRILANLWGDNIEALLSFLKKKFYMNAQDL--KNYKEVF 1250


>UniRef50_A1BG05 Cluster: Putative uncharacterized protein; n=1;
           Chlorobium phaeobacteroides DSM 266|Rep: Putative
           uncharacterized protein - Chlorobium phaeobacteroides
           (strain DSM 266)
          Length = 1282

 Score = 31.1 bits (67), Expect = 9.9
 Identities = 12/31 (38%), Positives = 22/31 (70%)
 Frame = -1

Query: 418 RDSNRVLKYLFFKFVADRVFS*GVYRSFLLI 326
           RDS+R++K  + +F  DRVF+ G++  F ++
Sbjct: 171 RDSSRLVKLTYLEFDLDRVFTDGLFADFAVL 201


>UniRef50_Q5CIQ7 Cluster: Zinc finger (C3HC4-type RING finger)
           protein family; n=2; Cryptosporidium|Rep: Zinc finger
           (C3HC4-type RING finger) protein family -
           Cryptosporidium hominis
          Length = 660

 Score = 31.1 bits (67), Expect = 9.9
 Identities = 17/47 (36%), Positives = 28/47 (59%)
 Frame = +3

Query: 243 SIITSLFLRQVYKHVF*IESFYILLFCNINKNDLYTP*ENTRSATNL 383
           +IIT+ F R++Y  +F I  F+ILLF   N + L++    + S  N+
Sbjct: 361 TIITTQFYRRLYVFLFGIVLFFILLFGICNSSILFSTFAKSLSKRNI 407


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 362,134,714
Number of Sequences: 1657284
Number of extensions: 6619405
Number of successful extensions: 10451
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10446
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 20232460752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)