Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_F13
         (427 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   0.70 
SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces pomb...    27   0.92 
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz...    25   6.5  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    24   8.6  

>SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 202

 Score = 27.9 bits (59), Expect = 0.70
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 2   VSRRCNKLLFKTSHLIYKICIYM 70
           +SR C KLLFK S ++   C +M
Sbjct: 149 ISRNCIKLLFKNSLVLLAACYFM 171


>SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 415

 Score = 27.5 bits (58), Expect = 0.92
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 130 MYNSGLHVRRLRPCCVVLTLCL 195
           +Y SG   R+L+PC +++  CL
Sbjct: 360 VYYSGYTARQLKPCAIIIMECL 381


>SPBC1306.01c ||SPBC409.22c|translation elongation factor
           G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 770

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -2

Query: 420 NAIAIEFLNTYSSNLLPTAYFLKAYTDHFC*YYRIKECKTIRFKIRVCKLALE 262
           N +  EF+N  +   +PT Y + A    F  Y  +K+   I   I+ C+  LE
Sbjct: 592 NVVDCEFINKVTGGTVPTQY-IPACEKAF--YEALKKGFLIGHPIKNCRFVLE 641


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 8   RRCNKLLFKTSHLIYKICIYMTFKVYFNNL 97
           R C  LLF ++ L   I IY  F V++ +L
Sbjct: 666 RSCRVLLFISTALFSIIMIYFVFCVFYISL 695


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,603,707
Number of Sequences: 5004
Number of extensions: 31039
Number of successful extensions: 59
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)