Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_F13
         (427 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L34587-1|AAA67650.1|  112|Homo sapiens RNA polymerase II elongat...    29   6.6  
BC100283-1|AAI00284.1|  112|Homo sapiens transcription elongatio...    29   6.6  
BC100028-1|AAI00029.1|  112|Homo sapiens TCEB1 protein protein.        29   6.6  
BC093065-1|AAH93065.1|  112|Homo sapiens TCEB1 protein protein.        29   6.6  
BC013809-1|AAH13809.1|  112|Homo sapiens transcription elongatio...    29   6.6  

>L34587-1|AAA67650.1|  112|Homo sapiens RNA polymerase II elongation
           factor SIII, p15 subunit protein.
          Length = 112

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +2

Query: 38  SHLIYKICIYMTFKVYFNN 94
           SH++ K+C+Y T+KV + N
Sbjct: 67  SHVLSKVCMYFTYKVRYTN 85


>BC100283-1|AAI00284.1|  112|Homo sapiens transcription elongation
           factor B (SIII), polypeptide 1 (15kDa, elongin C)
           protein.
          Length = 112

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +2

Query: 38  SHLIYKICIYMTFKVYFNN 94
           SH++ K+C+Y T+KV + N
Sbjct: 67  SHVLSKVCMYFTYKVRYTN 85


>BC100028-1|AAI00029.1|  112|Homo sapiens TCEB1 protein protein.
          Length = 112

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +2

Query: 38  SHLIYKICIYMTFKVYFNN 94
           SH++ K+C+Y T+KV + N
Sbjct: 67  SHVLSKVCMYFTYKVRYTN 85


>BC093065-1|AAH93065.1|  112|Homo sapiens TCEB1 protein protein.
          Length = 112

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +2

Query: 38  SHLIYKICIYMTFKVYFNN 94
           SH++ K+C+Y T+KV + N
Sbjct: 67  SHVLSKVCMYFTYKVRYTN 85


>BC013809-1|AAH13809.1|  112|Homo sapiens transcription elongation
           factor B (SIII), polypeptide 1 (15kDa, elongin C)
           protein.
          Length = 112

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +2

Query: 38  SHLIYKICIYMTFKVYFNN 94
           SH++ K+C+Y T+KV + N
Sbjct: 67  SHVLSKVCMYFTYKVRYTN 85


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,831,140
Number of Sequences: 237096
Number of extensions: 938410
Number of successful extensions: 890
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3316445452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)