Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_F13
         (427 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z70754-2|CAC42308.1|  764|Caenorhabditis elegans Hypothetical pr...    27   5.6  
Z70754-1|CAA94771.2|  966|Caenorhabditis elegans Hypothetical pr...    27   5.6  
AF164113-1|AAD45535.1|  810|Caenorhabditis elegans zinc finger p...    27   5.6  
Z71185-7|CAA94907.2|  520|Caenorhabditis elegans Hypothetical pr...    26   9.8  

>Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical protein
            C27B7.4 protein.
          Length = 1274

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = +3

Query: 141  WSPCASAQAVLCRPHFVPRYILYIVFD*ERSLLNSIITSLFLRQVYKH 284
            W+PC  AQAV CR +   +     V+     + NS+  S+F RQ+ KH
Sbjct: 888  WNPCHDAQAV-CRVYRYGQQKKTFVY--RLIMDNSMERSIFNRQISKH 932


>Z70754-2|CAC42308.1|  764|Caenorhabditis elegans Hypothetical
           protein F58E6.1b protein.
          Length = 764

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -2

Query: 423 RNAIAIEFLNTYSSNLLPTAYFLKAYTDHFC*YYRI 316
           +N I + + N  +SN+L T  F+ + +++FC   RI
Sbjct: 652 KNNINLSYSNIVASNILRTFTFINSKSNNFCSENRI 687


>Z70754-1|CAA94771.2|  966|Caenorhabditis elegans Hypothetical
           protein F58E6.1a protein.
          Length = 966

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -2

Query: 423 RNAIAIEFLNTYSSNLLPTAYFLKAYTDHFC*YYRI 316
           +N I + + N  +SN+L T  F+ + +++FC   RI
Sbjct: 652 KNNINLSYSNIVASNILRTFTFINSKSNNFCSENRI 687


>AF164113-1|AAD45535.1|  810|Caenorhabditis elegans zinc finger
           protein STAT-B protein.
          Length = 810

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -2

Query: 423 RNAIAIEFLNTYSSNLLPTAYFLKAYTDHFC*YYRI 316
           +N I + + N  +SN+L T  F+ + +++FC   RI
Sbjct: 698 KNNINLSYSNIVASNILRTFTFINSKSNNFCSENRI 733


>Z71185-7|CAA94907.2|  520|Caenorhabditis elegans Hypothetical
           protein C35A5.5 protein.
          Length = 520

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
 Frame = +2

Query: 8   RRCNKLLFKTSHLIY----KICIYMTFKVYFNNLDK-RVWIEN 121
           RR   LL K + +IY     IC Y    +YF N DK  +W+ +
Sbjct: 14  RRIKILLKKWNVVIYFVLILICFYFIIPIYFPNNDKMNLWLSS 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,596,705
Number of Sequences: 27780
Number of extensions: 166266
Number of successful extensions: 296
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)