Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_F12
(498 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces... 27 2.1
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 26 2.7
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p... 26 3.6
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 3.6
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom... 25 4.8
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch... 25 4.8
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce... 25 4.8
SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 6.3
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 25 6.3
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo... 25 6.3
>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 312
Score = 26.6 bits (56), Expect = 2.1
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 398 VDDFRSWRGVVLGRAASCCDLLRLSPT 478
VD FR W + SC DLL+LS T
Sbjct: 72 VDGFRLWITMEYCDGGSCLDLLKLSGT 98
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 26.2 bits (55), Expect = 2.7
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +3
Query: 291 PIRISEIGAVGSLTRAPRLRYGPDSPQFDVG 383
P S + +LTR P +R+ SP D G
Sbjct: 547 PTETSSLRRKNTLTRRPSIRHARSSPYIDTG 577
>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 438
Score = 25.8 bits (54), Expect = 3.6
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +1
Query: 145 DYA*TPLRPKPA*PNPARICSLWSPESREALNKVTLLVALHSG 273
+YA P P + A+ +W PE RE L+ ++ A++ G
Sbjct: 22 EYAAHNYHPLPVCFSKAKGAKVWDPEGREYLDFLSAYSAVNQG 64
>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 25.8 bits (54), Expect = 3.6
Identities = 19/70 (27%), Positives = 26/70 (37%)
Frame = -3
Query: 463 QQIAARRCSTEHNTPPGTEVVYRLFRAPTSN*GESGPYRSRGARVKEPTAPISEIRMGFD 284
+ I R N PP E Y SN PY + R P P S + ++
Sbjct: 447 EPILENRSLLHLNRPPPIETHYSY----ESNNSSFSPYYHKRHRQISPYYPTSSVYGVYE 502
Query: 283 VAPHRSGARL 254
PH S +R+
Sbjct: 503 SPPHMSDSRI 512
>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 992
Score = 25.4 bits (53), Expect = 4.8
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +3
Query: 45 CDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA--SKAEASLAESG 194
CD+ + S G L H + R GG + + + N+ SK E +A SG
Sbjct: 601 CDACLNLGTHSESIGDLEHQIRRYTGGISISPSAVTNNSDVSKYELGIAISG 652
>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 678
Score = 25.4 bits (53), Expect = 4.8
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -1
Query: 402 STDYSE---PRHRTEVSPDRIGAVAHALKNRPRRSPRSEW 292
STD+S + TE++PD + +A L + R + +W
Sbjct: 112 STDFSTLSTKKDETEIAPDCLHYIAELLFQKKEREVKEKW 151
>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 568
Score = 25.4 bits (53), Expect = 4.8
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +3
Query: 117 AGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQ 242
A A+ +A A +AEA E+ K+++ EP+++ +K+
Sbjct: 89 AAEAEAAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKK 130
>SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 148
Score = 25.0 bits (52), Expect = 6.3
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +3
Query: 45 CDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNASK 167
C A + +S G +VHA RAA + A CL K
Sbjct: 54 CLHRCAFLDLTKSRGRVVHACSRAALPRAIADASHCLEEKK 94
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 25.0 bits (52), Expect = 6.3
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Frame = +3
Query: 96 VHALGRAAGGAKLPSAGLCLNASKAEASLAES--GKDMLTVEPRESGGSKQSDFTSRAPL 269
V + R G + S + NA ++ + +S D + PR S S + R P
Sbjct: 182 VRSPSRLGNGPNVRSPKVGFNAKSDDSPVVKSPGSNDKPSASPRISVRSLGNSSVVRPPT 241
Query: 270 R*GATSKPIRISEIGAVGSLTR 335
R T R++ A GS+++
Sbjct: 242 RTSTTRPLSRVNVTNASGSISK 263
>SPAC23H3.02c |ini1||RING finger-like protein
Ini1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 117
Score = 25.0 bits (52), Expect = 6.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 96 PNVRNCGSSRTEQYYYRNDEPSVG 25
P V N GSSRT+ +Y R + G
Sbjct: 86 PRVINLGSSRTDWFYERKKFKNAG 109
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,065,795
Number of Sequences: 5004
Number of extensions: 40727
Number of successful extensions: 116
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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