Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_F12
(498 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1086 + 23858419-23859423,23859527-23859610 35 0.042
03_04_0029 - 16610182-16611753 32 0.29
03_05_0751 - 27389910-27392105 30 0.90
06_03_1248 + 28685911-28687719 30 1.2
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581 29 1.6
01_07_0041 + 40688242-40688278,40688396-40688502,40688612-406887... 29 1.6
05_06_0070 + 25342965-25343882,25343968-25344618 29 2.1
07_03_0528 + 19086835-19087363,19087514-19087539,19087753-190880... 29 2.7
06_02_0064 + 11062798-11063568,11064212-11064261,11064354-110645... 29 2.7
02_02_0737 - 13529180-13529543,13530661-13531178 29 2.7
04_01_0438 - 5723451-5723759,5723795-5723863,5724025-5724210,572... 28 4.8
02_01_0083 - 566201-567127,567223-567464,567623-567880,568173-56... 28 4.8
10_08_0931 - 21647562-21649037 27 6.3
08_02_0373 + 16397003-16397015,16397742-16398091,16423530-164238... 27 6.3
07_03_0626 + 20060013-20060273,20061017-20061274 27 6.3
04_03_0123 + 11514565-11514735,11515967-11516500 27 6.3
11_01_0731 - 6060680-6060982 27 8.4
10_08_0113 - 14896341-14897153 27 8.4
08_02_1485 - 27466761-27467753 27 8.4
06_01_0039 - 386576-387098,387173-387468,387744-388067,388165-38... 27 8.4
03_03_0263 + 15984244-15985321,15985411-15986144 27 8.4
02_03_0247 - 16809742-16809780,16810070-16810298,16810381-168105... 27 8.4
01_06_0695 - 31292622-31293317 27 8.4
01_06_0240 + 27794741-27795466 27 8.4
>07_03_1086 + 23858419-23859423,23859527-23859610
Length = 362
Score = 34.7 bits (76), Expect = 0.042
Identities = 36/108 (33%), Positives = 45/108 (41%), Gaps = 7/108 (6%)
Frame = +3
Query: 27 LLMARRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA-----SKAEASLAES 191
LL CD N A + LVHAL AA A +A L A AS+ +
Sbjct: 129 LLNLSICDENKAIIVEAGAIRPLVHALKSAASPAARENAACALLRLSQLDGSAAASIGRA 188
Query: 192 GKDMLTVEPRESGGS--KQSDFTSRAPLR*GATSKPIRISEIGAVGSL 329
G L V E+GG+ K+ T+ L GA +R E GAV L
Sbjct: 189 GAIPLLVSLLETGGARGKKDAATALYALCSGARENRLRAVEAGAVRPL 236
>03_04_0029 - 16610182-16611753
Length = 523
Score = 31.9 bits (69), Expect = 0.29
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = -3
Query: 340 GARVKEPTAPISEIRMGFDVAPHRSGARLVKSLCLEPPDSRGSTVSISLP 191
GA P AP S G+D +PH R KS+ L+ SR +T+ ++P
Sbjct: 299 GATATSPVAPFSASPPGYDFSPHL--LRYAKSINLDLRISRAATLDDAVP 346
>03_05_0751 - 27389910-27392105
Length = 731
Score = 30.3 bits (65), Expect = 0.90
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +3
Query: 114 AAGGAKLPSAG--LCLNASKAEASLAESGKDMLTVEPRESGGSKQSDFTSRAP 266
A G AK AG + LN SKAE + + ++ E SKQS F S P
Sbjct: 246 AGGVAKRQEAGKAISLNVSKAEVLKVKKNRQSEDLDVMEGRNSKQSAFCSDEP 298
>06_03_1248 + 28685911-28687719
Length = 602
Score = 29.9 bits (64), Expect = 1.2
Identities = 24/78 (30%), Positives = 33/78 (42%)
Frame = -1
Query: 498 SSDESPGVGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTEVSPDRIGAVAHALKNR 319
SS SP SL S + TTPR+ + S R D+ AVA +
Sbjct: 62 SSSSSPSSS-SLLSSSPSSKGTGTTPRRSADKAPSASAASSRPITPKDKAPAVATSRPIT 120
Query: 318 PRRSPRSEWASTSRLTGV 265
P+ ++ ASTSR + V
Sbjct: 121 PKDKAKAAAASTSRWSAV 138
>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
Length = 311
Score = 29.5 bits (63), Expect = 1.6
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 87 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 185
G LV L R GG SAG+C S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236
>01_07_0041 +
40688242-40688278,40688396-40688502,40688612-40688707,
40688859-40688915,40689033-40689194,40689310-40689394,
40689648-40689738,40689813-40689977,40690121-40690240,
40690330-40690402,40690482-40690650,40690741-40691651,
40691839-40691931,40692065-40692255,40692343-40692455,
40692757-40692783,40693915-40693949
Length = 843
Score = 29.5 bits (63), Expect = 1.6
Identities = 20/60 (33%), Positives = 25/60 (41%)
Frame = -1
Query: 435 PSTTPRQERKSSTDYSEPRHRTEVSPDRIGAVAHALKNRPRRSPRSEWASTSRLTGVERD 256
PST PR +R S EP V+P + V N P SP S + T V+ D
Sbjct: 337 PSTIPRPDRVSPWKI-EPASSPPVNPLPLSRVKRPRPNAPPASPESPILTKEAATKVDTD 395
>05_06_0070 + 25342965-25343882,25343968-25344618
Length = 522
Score = 29.1 bits (62), Expect = 2.1
Identities = 23/71 (32%), Positives = 31/71 (43%)
Frame = +3
Query: 6 RRQVSFTLLMARRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNASKAEASLA 185
RR LL ARR DS A R V+ + A+GG + L + + A S A
Sbjct: 132 RRVAVVRLLSARRVDSFRAL--REEEVASFVNRIRAASGGGVVNLTELIVGLTHAVVSRA 189
Query: 186 ESGKDMLTVEP 218
GK + V+P
Sbjct: 190 AFGKKLGGVDP 200
>07_03_0528 +
19086835-19087363,19087514-19087539,19087753-19088064,
19088152-19089038,19089370-19089658,19089744-19089782,
19089888-19089926
Length = 706
Score = 28.7 bits (61), Expect = 2.7
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = -1
Query: 444 AALPSTTPRQERKSSTDYSEPRHRTEVSPDRIGAVAHAL-KNRPRRSPRSEWASTSRLT 271
A+ PST P Q+R + + + ++ T+ DR A + A+ + P + R +S R+T
Sbjct: 395 ASAPSTPPAQDRHAQSYDVQLQYDTDFGEDRTEADSKAIYEPPPMKKSRKAHSSPQRIT 453
>06_02_0064 +
11062798-11063568,11064212-11064261,11064354-11064510,
11064598-11064816,11065301-11065429,11066502-11068031,
11068654-11069013,11069086-11069205,11069727-11069897,
11070022-11070180,11070327-11070452,11070660-11070968
Length = 1366
Score = 28.7 bits (61), Expect = 2.7
Identities = 21/70 (30%), Positives = 31/70 (44%)
Frame = -3
Query: 280 APHRSGARLVKSLCLEPPDSRGSTVSISLPDSARLASALEAFRHNPADGSFXXXXXXXXX 101
AP+ +GARL++ L P S VS+ +P A+A+ PA S
Sbjct: 111 APNPAGARLMQLLGNTAPTHLESAVSMPMPSEFSAAAAVAPPAPLPAMPSAPPARMPSSS 170
Query: 100 *TKCPKLRFL 71
+K P+ R L
Sbjct: 171 SSKMPRGRLL 180
>02_02_0737 - 13529180-13529543,13530661-13531178
Length = 293
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 160 PLRPKPA*PNPARICSLWSPESREALNKVTLLVALHSGEARRR 288
P RP A P+P S SP + +++ + ++H G+A RR
Sbjct: 114 PSRPPSALPSPTASSSTSSPPVDKIISRRIQVASMHHGQAIRR 156
>04_01_0438 - 5723451-5723759,5723795-5723863,5724025-5724210,
5724297-5724558,5724662-5724960,5725040-5725453,
5725533-5725899,5726002-5726146,5726562-5727558
Length = 1015
Score = 27.9 bits (59), Expect = 4.8
Identities = 20/57 (35%), Positives = 26/57 (45%)
Frame = -1
Query: 456 SQHDAALPSTTPRQERKSSTDYSEPRHRTEVSPDRIGAVAHALKNRPRRSPRSEWAS 286
SQ A P T QE+ ST +PR V PDR ++ + RR+ R AS
Sbjct: 958 SQLGGAPPVHT--QEQSPSTPLPDPRATRAVPPDRFTYSQDHVRAQARRTKRGRGAS 1012
>02_01_0083 -
566201-567127,567223-567464,567623-567880,568173-568298,
568420-568489
Length = 540
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 193 ARICSLWSPESREALNKVTLLVALHSGEARRRS 291
AR C W PESR +++V ++A + +R+ +
Sbjct: 449 ARECLQWEPESRPTMSEVVQILATIAPSSRKHA 481
>10_08_0931 - 21647562-21649037
Length = 491
Score = 27.5 bits (58), Expect = 6.3
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = +1
Query: 169 PKPA*PNPARICSLWSPESREALNKVTLLVALHSGEARRRSPF 297
P P P+P R+ SP S +L+K TL A +RRRSP+
Sbjct: 232 PSPPSPSPKRL----SPAS--SLSKETLAKASEDYSSRRRSPY 268
>08_02_0373 +
16397003-16397015,16397742-16398091,16423530-16423829,
16423908-16424354,16424441-16425046,16425140-16425327,
16425406-16425576,16425659-16425702,16425763-16425947,
16426033-16426071,16426282-16426332
Length = 797
Score = 27.5 bits (58), Expect = 6.3
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = -1
Query: 444 AALPSTTPRQERKSSTDYSEPRHRTEVSPDRIGAVAHAL-KNRPRRSPRSEWASTSRLT 271
A+ PS P Q+R + + + ++ T+ DR+ A + A+ + P + R +S R+T
Sbjct: 476 ASTPSAPPAQDRHAQSYDVQLQYDTDFGEDRMEADSKAIHEPPPMKKSRKAHSSPQRIT 534
>07_03_0626 + 20060013-20060273,20061017-20061274
Length = 172
Score = 27.5 bits (58), Expect = 6.3
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -1
Query: 186 RLGWLRP*RRSGIIP 142
RLGWLRP R S ++P
Sbjct: 32 RLGWLRPSRLSAVVP 46
>04_03_0123 + 11514565-11514735,11515967-11516500
Length = 234
Score = 27.5 bits (58), Expect = 6.3
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 277 PHRSGARLVKSLCLEPPDSRGSTVSISLPDSARLASALE 161
P R AR ++ +PP + GST + S+P R S E
Sbjct: 183 PRRVFARAAAAITPDPPPAGGSTAADSIPRQFRRLSPAE 221
>11_01_0731 - 6060680-6060982
Length = 100
Score = 27.1 bits (57), Expect = 8.4
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Frame = +3
Query: 87 GHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLT---VEPRESGGSKQSDFTS 257
G HALG GG + +AG C E ++ G + + GGS+ +
Sbjct: 8 GSATHALGSDNGGRRAAAAGACDGDVAGEEAMGHGGGGLALWRWADGSSGGGSRPARIRQ 67
Query: 258 -RAPLR 272
RA LR
Sbjct: 68 RRASLR 73
>10_08_0113 - 14896341-14897153
Length = 270
Score = 27.1 bits (57), Expect = 8.4
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 4/27 (14%)
Frame = +1
Query: 367 LSSMSGLGIVCRRL----PFLAGCCAR 435
L++++GLGI RR P LAGCC R
Sbjct: 181 LAAIAGLGIPWRRSWPSPPSLAGCCCR 207
>08_02_1485 - 27466761-27467753
Length = 330
Score = 27.1 bits (57), Expect = 8.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -3
Query: 232 PPDSRGSTVSISLPDSARLASALEAFRHNPA 140
PP + G +S +P A LA++L + NPA
Sbjct: 39 PPSATGPVLSRDVPLDASLATSLRLYLPNPA 69
>06_01_0039 -
386576-387098,387173-387468,387744-388067,388165-388276,
388355-388482,388914-389048,389122-389250,389620-389787,
389897-390019,390099-390227,390543-390866,390946-392901
Length = 1448
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 102 HEPNVRNCGSSRTEQYYYRNDEPSVG 25
H+ + + GSS + Q Y+ EPSVG
Sbjct: 436 HQASYKGFGSSTSHQSVYKGFEPSVG 461
>03_03_0263 + 15984244-15985321,15985411-15986144
Length = 603
Score = 27.1 bits (57), Expect = 8.4
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = +2
Query: 350 IRSGLTSVRCRGSE*SVDDFRSWRGVVLGRAASCCDLLRLSP 475
+ LTS+ RG + D ++W V+ SC D+ P
Sbjct: 142 VSRALTSIAWRGVDAVSQDLQAWLSAVITFQGSCVDMFPQGP 183
>02_03_0247 -
16809742-16809780,16810070-16810298,16810381-16810551,
16810630-16811516,16811604-16812050,16812129-16812836
Length = 826
Score = 27.1 bits (57), Expect = 8.4
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = -1
Query: 444 AALPSTTPRQERKSSTDYSEPRHRTEVSPDRIGAVAHAL-KNRPRRSPRSEWASTSRLT 271
A+ PS P Q+R + + + ++ + DR+ A + A+ K P + R +S R+T
Sbjct: 491 ASAPSAPPAQDRHAQSYDVQLQYDADFGEDRMEADSKAIHKPPPMKKSRKAHSSPQRIT 549
>01_06_0695 - 31292622-31293317
Length = 231
Score = 27.1 bits (57), Expect = 8.4
Identities = 14/42 (33%), Positives = 17/42 (40%)
Frame = -1
Query: 483 PGVGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTEVSP 358
P L Q D PS++ SST S P HR + P
Sbjct: 3 PSTKQLLPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPP 44
>01_06_0240 + 27794741-27795466
Length = 241
Score = 27.1 bits (57), Expect = 8.4
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -1
Query: 423 PRQERKSSTDYSEPRHRTEVSPDRIGAVAHALKNRPRRSPRSEWASTS 280
P QE ++ EP +PD GA H + + +P S A+TS
Sbjct: 49 PSQEEANNNQEQEPNAAAAATPDEAGANPHRIPD--DETPPSATATTS 94
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,134,746
Number of Sequences: 37544
Number of extensions: 343955
Number of successful extensions: 1166
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1166
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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