Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_F11
         (448 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   182   2e-47
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   175   3e-45
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    64   7e-12
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    25   4.0  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.0  
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p...    25   7.0  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    25   7.0  

>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score =  182 bits (443), Expect = 2e-47
 Identities = 83/100 (83%), Positives = 89/100 (89%)
 Frame = -2

Query: 447 RTIQFVD*CQTGFKVGINYQPPTVVPVGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLM 268
           RTIQFVD C TGFK+GI Y+PP  VP   +AKV RAVCMLSNTT+IAEAW+RLDHKFDLM
Sbjct: 343 RTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLM 402

Query: 267 YGKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMD 148
           Y KRAFVHWYVGEGMEEGEFSEAREDLAALE+DYEEVG D
Sbjct: 403 YSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQD 442


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  175 bits (426), Expect = 3e-45
 Identities = 80/100 (80%), Positives = 88/100 (88%)
 Frame = -2

Query: 447 RTIQFVD*CQTGFKVGINYQPPTVVPVGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLM 268
           RTIQFVD C TGFK+GI  +PP  +   ++AKV RAVCMLSNTT+IAEAW+RLDHKFDLM
Sbjct: 339 RTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLM 398

Query: 267 YGKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMD 148
           Y KRAFVHWYVGEGMEEGEFSEAREDLAALE+DYEEVG D
Sbjct: 399 YSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQD 438


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 64.5 bits (150), Expect = 7e-12
 Identities = 32/79 (40%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
 Frame = -2

Query: 375 VPVGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYGKRAFVHWYVGEGMEEGEFSEAR 196
           VP  DL   + +   + N+T+I E + RL  +F  M+ ++AF+HWY GEGM+E EF+EA 
Sbjct: 356 VPPKDL---KMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAE 412

Query: 195 ---EDLAALEKDYEEVGMD 148
               DL +  + Y+E G+D
Sbjct: 413 SNMNDLVSEYQQYQEAGID 431


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 15/47 (31%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
 Frame = -3

Query: 236 SVRVWRRVSSPKLVRT-WPLSRRTTKKSAWTPPRERVRDPKSTKPMN 99
           S   WR     K+    W L+ R   KS W    E + D K T   N
Sbjct: 604 SAGFWRDCGHCKMAEICWNLANRVYSKSGWESLSEHMLDLKPTLSEN 650


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +1

Query: 19  VFFFFCSIIIFLYFTGNVSVCEPPSNIFIGLVLFGSLTLS 138
           +FFFF  + +FL F  ++S     + +F+ L+L    TLS
Sbjct: 156 LFFFFLCVCVFLSFLFSLSHLLSLAILFLPLLLRVFSTLS 195


>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 473

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -3

Query: 200 LVRTWPLSRRTTKKSAWTPPRERVRDPKSTKPMNMFEGGSHTDTFP 63
           LV++ P+ R+TT K    PP   ++ P   KPM  F   + +   P
Sbjct: 331 LVQSAPVQRKTTPKIQRLPP-SSIQIP-PPKPMQKFPANAASSESP 374


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 336  CMLSNTTAIAEAWARLDHKFDLMY 265
            C++      +  W RLD+ F LMY
Sbjct: 1336 CVIVEMATGSPPWPRLDNHFSLMY 1359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,337,714
Number of Sequences: 5004
Number of extensions: 22657
Number of successful extensions: 94
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)