Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_F09
(550 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15; Bilater... 245 6e-64
UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6; Metazoa|... 184 1e-45
UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71; Euteleo... 143 3e-33
UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistos... 142 6e-33
UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes p... 135 6e-31
UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia ... 131 9e-30
UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep: ... 122 5e-27
UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2; Caenorha... 122 5e-27
UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2; Eukaryot... 113 3e-24
UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11; Eukar... 109 5e-23
UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17; Eukaryo... 105 9e-22
UniRef50_A0N0S1 Cluster: 60S ribosomal protein L6; n=1; Strongyl... 104 2e-21
UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia a... 101 1e-20
UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2; Cryptosp... 93 4e-18
UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15; Pezizom... 91 2e-17
UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16; Dikar... 89 6e-17
UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffith... 85 1e-15
UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2; Sordaria... 74 2e-12
UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=... 69 9e-11
UniRef50_A0CYT3 Cluster: 60S ribosomal protein L6; n=5; Oligohym... 69 9e-11
UniRef50_Q4Q4D3 Cluster: 60S ribosomal protein L6, putative; n=1... 66 7e-10
UniRef50_UPI0000DA1E66 Cluster: PREDICTED: similar to ribosomal ... 63 4e-09
UniRef50_A0EZZ8 Cluster: 60S ribosomal protein L6; n=5; Euteleos... 53 4e-06
UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e, puta... 50 3e-05
UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n... 46 4e-04
UniRef50_A5C5P0 Cluster: 60S ribosomal protein L6; n=1; Vitis vi... 44 0.002
UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7... 43 0.004
UniRef50_Q8SR91 Cluster: 60S RIBOSOMAL PROTEIN L6; n=1; Encephal... 42 0.007
UniRef50_Q7QVA1 Cluster: 60S ribosomal protein L27; n=1; Giardia... 35 1.4
UniRef50_UPI0000D55A40 Cluster: PREDICTED: similar to CG33232-PC... 33 4.4
>UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15;
Bilateria|Rep: 60S ribosomal protein L6 - Bombyx mori
(Silk moth)
Length = 273
Score = 245 bits (599), Expect = 6e-64
Identities = 118/173 (68%), Positives = 129/173 (74%)
Frame = +1
Query: 13 KIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFN 192
KIR S G+ FSKHVRR RPNL GTVCILLAGRHAGKR TGPFAFN
Sbjct: 101 KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFN 160
Query: 193 ACPLRRIPQRYVIGTSTKVDLGDFKLPAHLDDAYFXXXXXXXXXXXXXXQGEDIFATKKE 372
+CPLRRIPQRYVIGTST++ LG+FKLP H +D YF +G+DIFATKKE
Sbjct: 161 SCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFKKNKKCVKRTVKRKEGDDIFATKKE 220
Query: 373 KYVPSEQRKADQKLVDEAVIKAIRLRPDKKTLRGYLRASFGLRSSQFPHRLRF 531
KYVPSEQRK DQK VDEAVIKAI RPDKK LRGYL+A+FGLRSSQ+PHRLRF
Sbjct: 221 KYVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRGYLKAAFGLRSSQYPHRLRF 273
>UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6;
Metazoa|Rep: 60S ribosomal protein L6 - Drosophila
melanogaster (Fruit fly)
Length = 262
Score = 184 bits (448), Expect = 1e-45
Identities = 94/173 (54%), Positives = 113/173 (65%), Gaps = 1/173 (0%)
Frame = +1
Query: 16 IRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNA 195
++ R +FS+H R TR NLTPGTV ILLAGRH GKR TGPFA N+
Sbjct: 94 VKKRPSKANFSEHKRNTRRNLTPGTVLILLAGRHQGKRVVLLKVLASGLLLVTGPFALNS 153
Query: 196 CPLRRIPQRYVIGTSTKVDLGDFKLPAHLDDAYFXXXXXXXXXXXXXXQGE-DIFATKKE 372
CPLRR+ QRYVIGTS+KVDLG FK+P HL+DAYF GE DIFA KKE
Sbjct: 154 CPLRRVSQRYVIGTSSKVDLGAFKVPEHLNDAYF----RRLKAKKDKKTGEADIFAAKKE 209
Query: 373 KYVPSEQRKADQKLVDEAVIKAIRLRPDKKTLRGYLRASFGLRSSQFPHRLRF 531
++VP+EQRK DQK VD A++K I+ P+ K YL+ F L SSQ+PHR+RF
Sbjct: 210 RFVPNEQRKKDQKEVDAALLKVIKAHPEGKFFAKYLQNMFALHSSQYPHRMRF 262
>UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71;
Euteleostomi|Rep: 60S ribosomal protein L6 - Homo
sapiens (Human)
Length = 288
Score = 143 bits (346), Expect = 3e-33
Identities = 76/169 (44%), Positives = 99/169 (58%), Gaps = 1/169 (0%)
Frame = +1
Query: 28 SHGKS-FSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPL 204
SHGK FS+HVR+ R ++TPGT+ I+L GRH GKR TGP N PL
Sbjct: 127 SHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLLLVTGPLVLNRVPL 186
Query: 205 RRIPQRYVIGTSTKVDLGDFKLPAHLDDAYFXXXXXXXXXXXXXXQGEDIFATKKEKYVP 384
RR Q++VI TSTK+D+ + K+P HL DAYF Q +IF T+KEKY
Sbjct: 187 RRTHQKFVIATSTKIDISNVKIPKHLTDAYF----KKKKLRKPRHQEGEIFDTEKEKYEI 242
Query: 385 SEQRKADQKLVDEAVIKAIRLRPDKKTLRGYLRASFGLRSSQFPHRLRF 531
+EQRK DQK VD ++ I+ P L+GYLR+ F L + +PH+L F
Sbjct: 243 TEQRKIDQKAVDSQILPKIKAIPQ---LQGYLRSVFALTNGIYPHKLVF 288
>UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistosoma
japonicum|Rep: 60S ribosomal protein L6 - Schistosoma
japonicum (Blood fluke)
Length = 238
Score = 142 bits (343), Expect = 6e-33
Identities = 74/173 (42%), Positives = 96/173 (55%)
Frame = +1
Query: 13 KIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFN 192
K+R R K FS HVR+ R ++ PGTV ILLAG H GKR TGPF +N
Sbjct: 71 KLRLR-RAKCFSNHVRKIRSSIQPGTVLILLAGPHKGKRVIFLKALKSGLLLVTGPFKYN 129
Query: 193 ACPLRRIPQRYVIGTSTKVDLGDFKLPAHLDDAYFXXXXXXXXXXXXXXQGEDIFATKKE 372
PLRR+ Q YVI TST++D+ F +P H+DD YF +F+T+ +
Sbjct: 130 GVPLRRVNQCYVIATSTRIDISKFDVPKHIDDEYF----RRVDLKESKTDAGKLFSTETK 185
Query: 373 KYVPSEQRKADQKLVDEAVIKAIRLRPDKKTLRGYLRASFGLRSSQFPHRLRF 531
KY S+ RK DQKLVD + AI+ PD K L YLR+ F L +PH++ F
Sbjct: 186 KYTVSDIRKEDQKLVDNQIRAAIKSHPDSKILHAYLRSLFSLGKRDYPHKMIF 238
>UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes
pacificus|Rep: 60S ribosomal protein L6 - Ixodes
pacificus (western blacklegged tick)
Length = 268
Score = 135 bits (327), Expect = 6e-31
Identities = 74/168 (44%), Positives = 95/168 (56%)
Frame = +1
Query: 28 SHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLR 207
SH K S+ R +TPGTV ILLAG H GKR TGP+ N CPLR
Sbjct: 104 SHMKPSSRTRVALRKRITPGTVLILLAGPHRGKRVVFLKQLKTGLLPVTGPYGVNGCPLR 163
Query: 208 RIPQRYVIGTSTKVDLGDFKLPAHLDDAYFXXXXXXXXXXXXXXQGEDIFATKKEKYVPS 387
RI Q YVI TSTK+DL KLP LDD YF +GE IF K +++V S
Sbjct: 164 RINQIYVIATSTKLDLSKVKLPEGLDDRYF--KRNKGPKRGRKDEGE-IFEAKPQEHVVS 220
Query: 388 EQRKADQKLVDEAVIKAIRLRPDKKTLRGYLRASFGLRSSQFPHRLRF 531
E+ K Q VD+ V++A++ P+KK L YL A+F LR+ +PH+++F
Sbjct: 221 EEHKKTQAEVDKQVLEAVKAHPEKKMLLHYLAATFSLRNRMYPHKMKF 268
>UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia
franciscana|Rep: 60S ribosomal protein L6 - Artemia
sanfranciscana (Brine shrimp) (Artemia franciscana)
Length = 241
Score = 131 bits (317), Expect = 9e-30
Identities = 68/162 (41%), Positives = 96/162 (59%)
Frame = +1
Query: 46 SKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRY 225
+K+ + R +L PGT+ ILLAG + GKR +GP N PLRR+ Q+
Sbjct: 85 NKNPPKIRKSLQPGTILILLAGVNRGKRVVLLKALKSGLLLVSGPLKVNRVPLRRVHQKL 144
Query: 226 VIGTSTKVDLGDFKLPAHLDDAYFXXXXXXXXXXXXXXQGEDIFATKKEKYVPSEQRKAD 405
VI TST++D+ + K+P H++D YF +G DIFA+K E+Y P+EQRK D
Sbjct: 145 VIATSTRIDISNVKVPEHINDTYF----RRHKVKKEAKEG-DIFASKPERYTPTEQRKKD 199
Query: 406 QKLVDEAVIKAIRLRPDKKTLRGYLRASFGLRSSQFPHRLRF 531
Q VD ++KAI+ +PD L YLR FGL+++ PHRL+F
Sbjct: 200 QAEVDVQLLKAIKAQPDAAMLVKYLRTIFGLKNNMIPHRLKF 241
>UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep:
Predicted protein - Nematostella vectensis
Length = 244
Score = 122 bits (294), Expect = 5e-27
Identities = 70/159 (44%), Positives = 86/159 (54%), Gaps = 2/159 (1%)
Frame = +1
Query: 61 RTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTS 240
+ R ++TPGTV ILLAG H GKR TGPF N PLRRIPQ YVI TS
Sbjct: 95 KLRSSITPGTVLILLAGAHRGKRVVFLKQLNSGLLLVTGPFKINGVPLRRIPQSYVIATS 154
Query: 241 TKVDLGDFKLPAH--LDDAYFXXXXXXXXXXXXXXQGEDIFATKKEKYVPSEQRKADQKL 414
T +D+ D KLP H D++YF + ED+F E+ PSEQR ADQK
Sbjct: 155 THIDVSDVKLPEHAFADESYF------KGEPKKKKRSEDMFEEAAEEKKPSEQRIADQKA 208
Query: 415 VDEAVIKAIRLRPDKKTLRGYLRASFGLRSSQFPHRLRF 531
VD+ ++ I P+ K YL + F LR QFPH + F
Sbjct: 209 VDDQILPKISAVPNMKK---YLSSLFSLRKGQFPHDMVF 244
>UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2;
Caenorhabditis|Rep: 60S ribosomal protein L6 -
Caenorhabditis elegans
Length = 217
Score = 122 bits (294), Expect = 5e-27
Identities = 67/156 (42%), Positives = 87/156 (55%), Gaps = 1/156 (0%)
Frame = +1
Query: 67 RPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXF-TGPFAFNACPLRRIPQRYVIGTST 243
R LTPGTV I+LAGRH GKR TGP N PLRRI Q +VI TS
Sbjct: 68 RKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATSL 127
Query: 244 KVDLGDFKLPAHLDDAYFXXXXXXXXXXXXXXQGEDIFATKKEKYVPSEQRKADQKLVDE 423
KV++ K+P H++D YF G++IFA+ K +Y SEQRK D K VD
Sbjct: 128 KVNVSGVKIPEHINDEYFKRKSTAQKT------GKNIFASGKTEYTVSEQRKKDIKTVDA 181
Query: 424 AVIKAIRLRPDKKTLRGYLRASFGLRSSQFPHRLRF 531
++ AI+ P+ K L GYL F L +Q+PH+++F
Sbjct: 182 PILAAIKKHPEHKFLFGYLGTRFSLGKNQYPHKMQF 217
>UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2;
Eukaryota|Rep: 60S ribosomal protein L6 - Dictyostelium
discoideum AX4
Length = 236
Score = 113 bits (271), Expect = 3e-24
Identities = 63/155 (40%), Positives = 85/155 (54%)
Frame = +1
Query: 67 RPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTSTK 246
R ++TPGTV I+LAGR AGKR TGPF N PLRRI QRYVI TSTK
Sbjct: 88 RKSITPGTVLIILAGRFAGKRVVALKQLDSGLILITGPFKVNGVPLRRIDQRYVIATSTK 147
Query: 247 VDLGDFKLPAHLDDAYFXXXXXXXXXXXXXXQGEDIFATKKEKYVPSEQRKADQKLVDEA 426
+D+ K+ A ++DAYF ++ K EK ++ R ADQK VD A
Sbjct: 148 IDVSSVKVAATINDAYFAAEKKSTTKSEGAFFSDE---KKAEKKKIADSRVADQKSVDSA 204
Query: 427 VIKAIRLRPDKKTLRGYLRASFGLRSSQFPHRLRF 531
++ ++ +K L YL+ F L+ +FPH+L+F
Sbjct: 205 ILAVLK---KEKFLTVYLKTKFYLKKGEFPHQLKF 236
>UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11;
Eukaryota|Rep: 60S ribosomal protein L6-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 233
Score = 109 bits (261), Expect = 5e-23
Identities = 68/157 (43%), Positives = 81/157 (51%)
Frame = +1
Query: 61 RTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTS 240
+ R ++TPGTV I+LAGR GKR TGPF N PLRR+ Q YVIGTS
Sbjct: 84 KLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTS 143
Query: 241 TKVDLGDFKLPAHLDDAYFXXXXXXXXXXXXXXQGEDIFATKKEKYVPSEQRKADQKLVD 420
TKVD+ L DD YF +GE A K+EK + +K DQK VD
Sbjct: 144 TKVDISGVTLD-KFDDKYF---GKVAEKKKKKTEGEFFEAEKEEKKEIPQGKKDDQKAVD 199
Query: 421 EAVIKAIRLRPDKKTLRGYLRASFGLRSSQFPHRLRF 531
A+IKAI P+ KT YL A F L+ PH L F
Sbjct: 200 AALIKAIEAVPELKT---YLGARFSLKQGMKPHELVF 233
>UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17;
Eukaryota|Rep: 60S ribosomal protein L6 - Oryza sativa
(Rice)
Length = 222
Score = 105 bits (251), Expect = 9e-22
Identities = 69/159 (43%), Positives = 84/159 (52%), Gaps = 2/159 (1%)
Frame = +1
Query: 61 RTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTS 240
+ R ++TPGTV ILLAGR GKR TGPF N P+RR+ Q YVI TS
Sbjct: 73 KLRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLVTGPFKINGVPIRRVNQPYVIATS 132
Query: 241 TKVDLGDFKLPAHLDDAYFXXXXXXXXXXXXXXQGEDIFATKKE--KYVPSEQRKADQKL 414
TKVD+ + DD YF +GE +F T+KE K +P E +K DQK+
Sbjct: 133 TKVDISGVNV-EKFDDKYF---SRDKKQKAKKTEGE-LFETEKEATKNLP-EFKKEDQKV 186
Query: 415 VDEAVIKAIRLRPDKKTLRGYLRASFGLRSSQFPHRLRF 531
VD +IKAI PD KT YL A F LR PH + F
Sbjct: 187 VDAELIKAIEAVPDLKT---YLGARFSLRDGDKPHEMVF 222
>UniRef50_A0N0S1 Cluster: 60S ribosomal protein L6; n=1;
Strongyloides papillosus|Rep: 60S ribosomal protein L6 -
Strongyloides papillosus
Length = 127
Score = 104 bits (249), Expect = 2e-21
Identities = 51/121 (42%), Positives = 73/121 (60%)
Frame = +1
Query: 169 FTGPFAFNACPLRRIPQRYVIGTSTKVDLGDFKLPAHLDDAYFXXXXXXXXXXXXXXQGE 348
F GPF+ N P+RRI Q++V+ TSTK+D+ K+PA + D YF + +
Sbjct: 13 FLGPFSINGVPVRRIAQKFVLPTSTKIDVSGVKIPATMTDDYFKRTKYFGK------EKK 66
Query: 349 DIFATKKEKYVPSEQRKADQKLVDEAVIKAIRLRPDKKTLRGYLRASFGLRSSQFPHRLR 528
DIF K++Y ++ RKADQK +D AV+ +I+ D K L GYLR +FGL Q+PH +
Sbjct: 67 DIFEQGKQEYTLTDARKADQKTIDTAVLGSIKKHTDGKLLAGYLRTNFGLSKRQYPHNMV 126
Query: 529 F 531
F
Sbjct: 127 F 127
>UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia
asiatica|Rep: 60S ribosomal protein L6 - Taenia asiatica
(Asian tapeworm)
Length = 212
Score = 101 bits (241), Expect = 1e-20
Identities = 54/132 (40%), Positives = 73/132 (55%)
Frame = +1
Query: 43 FSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQR 222
F+ H RR R ++TPG V ILLAGRH KR TGPF +N PLRR+ QR
Sbjct: 86 FADHRRRIRKSITPGKVLILLAGRHRAKRVVFLKSLASGLLLVTGPFKYNGVPLRRVNQR 145
Query: 223 YVIGTSTKVDLGDFKLPAHLDDAYFXXXXXXXXXXXXXXQGEDIFATKKEKYVPSEQRKA 402
YVI T T++ + + K+P+ L+D +F + IFA +++KY S+ RK
Sbjct: 146 YVIATKTRIKIKNIKIPSQLNDEFFRRQDLKTKKSV-----DKIFAEEEKKYTVSDDRKK 200
Query: 403 DQKLVDEAVIKA 438
QK VD A+I A
Sbjct: 201 LQKQVDTALIAA 212
>UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L6 -
Cryptosporidium hominis
Length = 184
Score = 93.1 bits (221), Expect = 4e-18
Identities = 56/158 (35%), Positives = 80/158 (50%), Gaps = 1/158 (0%)
Frame = +1
Query: 61 RTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTS 240
+ R +L PG VCILLAG + GKR TGP+A N P+RR+ Y+I TS
Sbjct: 34 KLRSSLQPGVVCILLAGPYKGKRVVMLKALPSGLVVVTGPYALNGVPVRRVNPAYIIATS 93
Query: 241 TKVDLGDFKLPAHLDDAY-FXXXXXXXXXXXXXXQGEDIFATKKEKYVPSEQRKADQKLV 417
TKVD+ + D+ + QGE+ TK + V SE+RK Q+ +
Sbjct: 94 TKVDVSKADVSKFTDEYFKVDRSKLKKSKDAFMDQGEE---TKVNRVV-SEERKKTQQAL 149
Query: 418 DEAVIKAIRLRPDKKTLRGYLRASFGLRSSQFPHRLRF 531
D ++I +I+ P + YL+ F L S FPH+L+F
Sbjct: 150 DASIIPSIQSNP---LMMSYLKTRFTLTSGMFPHKLKF 184
>UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15;
Pezizomycotina|Rep: 60S ribosomal protein L6 -
Coccidioides immitis
Length = 206
Score = 91.1 bits (216), Expect = 2e-17
Identities = 62/166 (37%), Positives = 81/166 (48%), Gaps = 6/166 (3%)
Frame = +1
Query: 52 HVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVI 231
H + RP+L PGT+ ILLAGR GKR TGPF N PLRR+ RYVI
Sbjct: 50 HPTKLRPSLQPGTILILLAGRFRGKRVILLKHLGQGVLLVTGPFKLNGVPLRRVNARYVI 109
Query: 232 GTSTKVDLG--DFK-LPAHLDDAYFXXXXXXXXXXXXXXQGEDIF---ATKKEKYVPSEQ 393
TS+ VDL D K L YF +GE+ F K EK +
Sbjct: 110 ATSSTVDLNGVDQKTLEKVSQPEYF------TREKAEQKKGEEAFFKQGEKPEKKKVASA 163
Query: 394 RKADQKLVDEAVIKAIRLRPDKKTLRGYLRASFGLRSSQFPHRLRF 531
R ADQK +D+A++ I+ P L YL ++F LR+ PH +++
Sbjct: 164 RAADQKAIDQALLATIKKEP---FLGSYLASTFSLRTGDKPHEMKW 206
>UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16;
Dikarya|Rep: 60S ribosomal protein L6-A - Saccharomyces
cerevisiae (Baker's yeast)
Length = 176
Score = 89.0 bits (211), Expect = 6e-17
Identities = 58/158 (36%), Positives = 81/158 (51%)
Frame = +1
Query: 58 RRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGT 237
++ R +L PGTV ILLAGR GKR +GPF N PLRR+ RYVI T
Sbjct: 28 QKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGPFKVNGVPLRRVNARYVIAT 87
Query: 238 STKVDLGDFKLPAHLDDAYFXXXXXXXXXXXXXXQGEDIFATKKEKYVPSEQRKADQKLV 417
STKV + + + YF + ++F ++ K + +E R DQK+V
Sbjct: 88 STKVSVEGVNV-EKFNVEYF----AKEKLTKKEKKEANLFPEQQNKEIKAE-RVEDQKVV 141
Query: 418 DEAVIKAIRLRPDKKTLRGYLRASFGLRSSQFPHRLRF 531
D+A+I I+ P L+ YL ASF L++ PH L+F
Sbjct: 142 DKALIAEIKKTP---LLKQYLSASFSLKNGDKPHMLKF 176
>UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffithsia
japonica|Rep: 60S ribosomal protein L6 - Griffithsia
japonica (Red alga)
Length = 216
Score = 84.6 bits (200), Expect = 1e-15
Identities = 51/156 (32%), Positives = 72/156 (46%)
Frame = +1
Query: 61 RTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTS 240
+ RP++ GT+ ILLAG G R TGP+A N PL R+ QRYVI TS
Sbjct: 67 KLRPSIKSGTIVILLAGVFRGSRVVVLKQLDSGQLLVTGPYAVNRIPLTRVDQRYVIATS 126
Query: 241 TKVDLGDFKLPAHLDDAYFXXXXXXXXXXXXXXQGEDIFATKKEKYVPSEQRKADQKLVD 420
T +D+ + +D+AYF D ++K E R ADQK +D
Sbjct: 127 TSIDVSKVDV-KKIDNAYFRKPQKKKKTDVMEV---DTAKKDEQKTKAIEARIADQKAID 182
Query: 421 EAVIKAIRLRPDKKTLRGYLRASFGLRSSQFPHRLR 528
++ I P L YL+ F L+ Q+PH ++
Sbjct: 183 AVLLPVIEKEP---LLSSYLKVKFSLKKGQYPHAMK 215
>UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2;
Sordariaceae|Rep: 60S ribosomal protein L6 - Neurospora
crassa
Length = 207
Score = 74.1 bits (174), Expect = 2e-12
Identities = 64/178 (35%), Positives = 76/178 (42%), Gaps = 23/178 (12%)
Frame = +1
Query: 67 RPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTSTK 246
R L PGTV ILLAGR GKR TGPF N PLRR+ RYVI TS K
Sbjct: 36 RSTLVPGTVLILLAGRFRGKRVVLLKALDQGVLLVTGPFKINGVPLRRVNARYVIATSQK 95
Query: 247 VDLG---DFKLPAHLDDAYF--XXXXXXXXXXXXXXQGE------------------DIF 357
VDL + K+ YF QGE DI
Sbjct: 96 VDLAGIDEAKINEIAQPKYFTAEKSKEKAGEEAFFKQGEKPQVRLGNSELEHGAHNADIV 155
Query: 358 ATKKEKYVPSEQRKADQKLVDEAVIKAIRLRPDKKTLRGYLRASFGLRSSQFPHRLRF 531
KKE S R ADQK +D+A+I I+ + L YL +SF LR PH +++
Sbjct: 156 MQKKE---VSSSRVADQKAIDKALIANIK---KVEFLASYLASSFTLRKGDKPHEMKW 207
>UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=3;
Piroplasmida|Rep: 60S ribosomal protein L6e, putative -
Theileria parva
Length = 212
Score = 68.5 bits (160), Expect = 9e-11
Identities = 57/185 (30%), Positives = 84/185 (45%), Gaps = 19/185 (10%)
Frame = +1
Query: 34 GKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRI 213
G+ ++ V + R +L PG V ILL G + GKR TGPF+FN PLRR+
Sbjct: 31 GRKYAS-VPKVRESLKPGAVLILLTGSYKGKRVVLLKVLKSGLLLVTGPFSFNGVPLRRV 89
Query: 214 PQRYVIGTSTKV----DLGDFKLPAHLDDAYFXXXXXXXXXXXXXXQGEDIFATKKEKYV 381
RYVI TST V + L + ++ A E F +K+K
Sbjct: 90 NSRYVIATSTNVYEFPEYDGSSLKSSVERAVSDLTDESFGKTKETKLAE--FKDRKKKNK 147
Query: 382 PSEQRKADQKLVDE------AVIKAIRLRPD-------KKT--LRGYLRASFGLRSSQFP 516
+ D+ V E A +KA++ + D KK+ L YL++ F LR++ +P
Sbjct: 148 NKDSMFVDEPSVSEKSPELMAKLKALQSKVDDVLVPSLKKSQHLTKYLKSRFTLRNNMYP 207
Query: 517 HRLRF 531
H L+F
Sbjct: 208 HLLKF 212
>UniRef50_A0CYT3 Cluster: 60S ribosomal protein L6; n=5;
Oligohymenophorea|Rep: 60S ribosomal protein L6 -
Paramecium tetraurelia
Length = 208
Score = 68.5 bits (160), Expect = 9e-11
Identities = 51/159 (32%), Positives = 70/159 (44%), Gaps = 3/159 (1%)
Frame = +1
Query: 64 TRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTST 243
T + PG V ILL+GR GKR TGPF N PL+R+ YVI TST
Sbjct: 54 TLRKIVPGQVLILLSGRFQGKRVVFLKQLKSGLLLVTGPFKINGVPLKRVNSAYVIPTST 113
Query: 244 KVDLGDFKLPAHLDDAYF---XXXXXXXXXXXXXXQGEDIFATKKEKYVPSEQRKADQKL 414
KVD+ ++D YF +GE + + + ++ QK
Sbjct: 114 KVDVTGVN-ANQINDDYFKRTQAQRRKNEQGFWAKRGELTVEQQTAEKTRLDGKRNTQKS 172
Query: 415 VDEAVIKAIRLRPDKKTLRGYLRASFGLRSSQFPHRLRF 531
VD A+I AI+ + L+ YL A F + + PH L F
Sbjct: 173 VDAALITAIK---KTQLLKQYLGARFTIGKTTRPHELVF 208
>UniRef50_Q4Q4D3 Cluster: 60S ribosomal protein L6, putative; n=11;
Trypanosomatidae|Rep: 60S ribosomal protein L6, putative
- Leishmania major
Length = 195
Score = 65.7 bits (153), Expect = 7e-10
Identities = 49/163 (30%), Positives = 69/163 (42%), Gaps = 11/163 (6%)
Frame = +1
Query: 67 RPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXF-TGPFAFNACPLRRIPQRYVIGTST 243
R + PG + I+LAGR G+R +GP +N P+RRI RYVI TST
Sbjct: 30 RKSCAPGAIAIILAGRFRGRRAVILKQLPHNGPLVVSGPMKYNGVPIRRIDSRYVIATST 89
Query: 244 KVDLGDFKLPAHLDDAYFXXXXXXXXXXXXXXQGED-----IFATKK-----EKYVPSEQ 393
VD+ + + G+ A KK +K + S+
Sbjct: 90 TVDISSVDTAPITAEVFQRPKAEKPTKSEGDFMGDKQKAKAEKAAKKTSKAGKKTLVSDA 149
Query: 394 RKADQKLVDEAVIKAIRLRPDKKTLRGYLRASFGLRSSQFPHR 522
R QK +D A+I AI+ K GYLR+ F ++ PHR
Sbjct: 150 RAQLQKKIDAALIAAIKKDAQGKEKAGYLRSVFTVKPGDAPHR 192
>UniRef50_UPI0000DA1E66 Cluster: PREDICTED: similar to ribosomal
protein L6; n=5; Eutheria|Rep: PREDICTED: similar to
ribosomal protein L6 - Rattus norvegicus
Length = 112
Score = 63.3 bits (147), Expect = 4e-09
Identities = 34/75 (45%), Positives = 39/75 (52%)
Frame = +1
Query: 73 NLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTSTKVD 252
++TP TV I+L GRH GKR TGP A N PL R+ Q VI T TKVD
Sbjct: 8 SITPQTVLIILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLCRMHQSVVISTFTKVD 67
Query: 253 LGDFKLPAHLDDAYF 297
+ K HL DA F
Sbjct: 68 ICKVKTSKHLTDASF 82
>UniRef50_A0EZZ8 Cluster: 60S ribosomal protein L6; n=5;
Euteleostomi|Rep: 60S ribosomal protein L6 -
Scophthalmus maximus (Turbot)
Length = 54
Score = 53.2 bits (122), Expect = 4e-06
Identities = 27/55 (49%), Positives = 35/55 (63%)
Frame = +1
Query: 367 KEKYVPSEQRKADQKLVDEAVIKAIRLRPDKKTLRGYLRASFGLRSSQFPHRLRF 531
KEKY +EQRK DQK VD ++ ++ P LRGYLR+SF L +PH+L F
Sbjct: 3 KEKYQLTEQRKEDQKAVDAQLLTLVKKTPQ---LRGYLRSSFCLSGGVYPHKLVF 54
>UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e,
putative; n=5; Plasmodium|Rep: 60S ribosomal subunit
protein L6e, putative - Plasmodium chabaudi
Length = 241
Score = 50.4 bits (115), Expect = 3e-05
Identities = 23/64 (35%), Positives = 33/64 (51%)
Frame = +1
Query: 58 RRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGT 237
R+ R ++ G V I+L G+H GKR GP+ N PL+R+ RY+I T
Sbjct: 68 RKMRSSIQVGKVAIILTGKHMGKRCIIAKVLKSGLLAVVGPYEVNGVPLKRVDPRYLIVT 127
Query: 238 STKV 249
ST +
Sbjct: 128 STNI 131
>UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n=2;
Rattus norvegicus|Rep: UPI0000DC20AA UniRef100 entry -
Rattus norvegicus
Length = 261
Score = 46.4 bits (105), Expect = 4e-04
Identities = 46/151 (30%), Positives = 66/151 (43%)
Frame = +1
Query: 73 NLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTSTKVD 252
N TP TV I++ G+H +R TGP A N L R Q+ V+ TST ++
Sbjct: 133 NSTPETVLIIITGQH--RRVVFLKQLSRGFLLITGPLALNLVLLYRTHQKSVVITSTTIN 190
Query: 253 LGDFKLPAHLDDAYFXXXXXXXXXXXXXXQGEDIFATKKEKYVPSEQRKADQKLVDEAVI 432
D YF QG+ IF +K+KY +Q KAD K +D ++
Sbjct: 191 T--------QTDVYF---KMKQLHKPRHQQGK-IFDMEKDKY-GIKQCKADHKTLDSQIL 237
Query: 433 KAIRLRPDKKTLRGYLRASFGLRSSQFPHRL 525
P +K +L +SF L + PH+L
Sbjct: 238 ------PKRKL---FLNSSFSLANGMCPHKL 259
>UniRef50_A5C5P0 Cluster: 60S ribosomal protein L6; n=1; Vitis
vinifera|Rep: 60S ribosomal protein L6 - Vitis vinifera
(Grape)
Length = 249
Score = 44.4 bits (100), Expect = 0.002
Identities = 22/42 (52%), Positives = 25/42 (59%)
Frame = +1
Query: 172 TGPFAFNACPLRRIPQRYVIGTSTKVDLGDFKLPAHLDDAYF 297
TG F N PLRR+ Q YVI TSTKVD+ + DD YF
Sbjct: 172 TGSFKINGVPLRRVNQAYVIATSTKVDIPKVNV-EKFDDKYF 212
>UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7;
Trichomonas vaginalis G3|Rep: 60S ribosomal protein L6,
putative - Trichomonas vaginalis G3
Length = 151
Score = 43.2 bits (97), Expect = 0.004
Identities = 25/76 (32%), Positives = 35/76 (46%)
Frame = +1
Query: 64 TRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTST 243
TRP+L GTV I++ G H GKR GP P+ I Q Y+I TST
Sbjct: 52 TRPSLKVGTVVIVVGGEHQGKRAVVVADQGAGIVKIAGP----VVPVNEISQDYLIATST 107
Query: 244 KVDLGDFKLPAHLDDA 291
+++ A ++ A
Sbjct: 108 SIEVAANATEAQVEAA 123
>UniRef50_Q8SR91 Cluster: 60S RIBOSOMAL PROTEIN L6; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L6 -
Encephalitozoon cuniculi
Length = 155
Score = 42.3 bits (95), Expect = 0.007
Identities = 25/67 (37%), Positives = 34/67 (50%)
Frame = +1
Query: 55 VRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIG 234
VRRT +L G V ++L G A +R GP + N PL RI +RY++
Sbjct: 22 VRRT--DLVKGMVVVVLEGVFASRRVVYLKGLEDNIALCAGPKSINGIPLFRIDERYLLA 79
Query: 235 TSTKVDL 255
TST +DL
Sbjct: 80 TSTVLDL 86
>UniRef50_Q7QVA1 Cluster: 60S ribosomal protein L27; n=1; Giardia
lamblia ATCC 50803|Rep: 60S ribosomal protein L27 -
Giardia lamblia ATCC 50803
Length = 135
Score = 34.7 bits (76), Expect = 1.4
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = +1
Query: 64 TRPNLTPGTVCILLAGRHAGKR 129
++P + PG VCI+L GRHAGK+
Sbjct: 2 SQPIIKPGLVCIVLQGRHAGKK 23
>UniRef50_UPI0000D55A40 Cluster: PREDICTED: similar to CG33232-PC,
isoform C; n=1; Tribolium castaneum|Rep: PREDICTED:
similar to CG33232-PC, isoform C - Tribolium castaneum
Length = 2178
Score = 33.1 bits (72), Expect = 4.4
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = -2
Query: 297 KVGIVKMRR*LEIAQVYLSR-CSNDIALRNPAQGTRVESKRSSEE*QTTRQHSNE 136
K GI+K RR L+ +QV R CS D+A + P + ++++R S + TR S E
Sbjct: 392 KQGILKKRRSLDESQVMRHRSCSPDVANKAPDSRSILKNQRRSSMEELTRTQSPE 446
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 506,192,442
Number of Sequences: 1657284
Number of extensions: 9290513
Number of successful extensions: 29829
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 28620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29792
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 35822246242
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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