Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_F09
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    87   2e-18
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    26   3.2  
SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces...    26   3.2  
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha...    25   7.3  
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    25   9.7  
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy...    25   9.7  

>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 87.0 bits (206), Expect = 2e-18
 Identities = 63/168 (37%), Positives = 79/168 (47%), Gaps = 3/168 (1%)
 Frame = +1

Query: 37  KSFSKHVRRT--RPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRR 210
           K   K VR T  R +L PGTVCILLAGR  GKR              TGP+  N  P+RR
Sbjct: 37  KKARKAVRPTKLRASLAPGTVCILLAGRFRGKR-VVVLSQLEDTLVVTGPYKVNGVPIRR 95

Query: 211 IPQRYVIGTST-KVDLGDFKLPAHLDDAYFXXXXXXXXXXXXXXQGEDIFATKKEKYVPS 387
           +  RYVI TS  K+D+    +      AYF              + E  FA    K    
Sbjct: 96  VNHRYVIATSAPKIDVSGVSV-EKFTKAYF----AKQKRSGPVKKDEAFFAENAPKNALP 150

Query: 388 EQRKADQKLVDEAVIKAIRLRPDKKTLRGYLRASFGLRSSQFPHRLRF 531
            +R ADQK VD  ++ AI+  P+ K    YL ASF L +   PH ++F
Sbjct: 151 AERIADQKAVDAKLLPAIKAIPNMKE---YLAASFALSNGDRPHLMKF 195


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +2

Query: 134 CSLECCRVVCYSSLDLL 184
           CSLE   +VCYSSL +L
Sbjct: 764 CSLEVGPIVCYSSLKVL 780


>SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 534 LEAQTVRELTRSEPERGPEVTAECLLVGPESDRLY 430
           LE + + EL R  PER P+   + +++    DR+Y
Sbjct: 139 LETKRLFELARYLPERYPKADKKDIIIKNPGDRVY 173


>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 276

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 188 KAKGPVKSSRPLGNTPTSTTR 126
           KAK P+KSS+   N P S  R
Sbjct: 3   KAKSPIKSSKKSVNQPKSVLR 23


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 144 SVAEWSATLHWTFCFQRVSPAQDSAAL 224
           S+ ++SA  H   CF   SP Q++ A+
Sbjct: 266 SLIKYSAAAHTRICFAVNSPCQEALAI 292


>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 667

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 158 PLGNTPTSTTRLPACLPANR 99
           P  N  T  TRLP  +P+NR
Sbjct: 330 PRFNLATGATRLPFAIPSNR 349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,983,027
Number of Sequences: 5004
Number of extensions: 34305
Number of successful extensions: 118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)