Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_F09
(550 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379... 106 1e-23
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924... 98 5e-21
03_05_0412 + 23993452-23994068,23996249-23996350,23996799-239969... 30 1.4
07_03_1327 + 25833927-25834391,25834943-25835340,25835395-25836331 27 7.5
04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251 27 7.5
02_05_0902 + 32620668-32621209,32621847-32622258,32622471-326226... 27 7.5
03_06_0234 - 32535281-32535919,32536121-32536860,32536911-32536953 27 9.9
>04_04_0211 -
23636377-23636532,23636624-23636805,23637853-23637959,
23637997-23638280
Length = 242
Score = 106 bits (255), Expect = 1e-23
Identities = 70/166 (42%), Positives = 86/166 (51%), Gaps = 2/166 (1%)
Frame = +1
Query: 40 SFSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQ 219
S + + R ++TPGTV ILLAGR GKR TGPF N P+RR+ Q
Sbjct: 86 SLFRFILLMRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLVTGPFKINGVPIRRVNQ 145
Query: 220 RYVIGTSTKVDLGDFKLPAHLDDAYFXXXXXXXXXXXXXXQGEDIFATKKE--KYVPSEQ 393
YVI TSTKVD+ + DD YF +GE +F T+KE K +P E
Sbjct: 146 PYVIATSTKVDISGVNV-EKFDDKYF---SRDKKQKAKKTEGE-LFETEKEATKNLP-EF 199
Query: 394 RKADQKLVDEAVIKAIRLRPDKKTLRGYLRASFGLRSSQFPHRLRF 531
+K DQK+VD +IKAI PD KT YL A F LR PH + F
Sbjct: 200 KKEDQKVVDAELIKAIEAVPDLKT---YLGARFSLRDGDKPHEMVF 242
>02_04_0433 -
22891261-22891509,22892181-22892301,22892405-22892496,
22892692-22892755,22892855-22892920,22893102-22893193,
22893991-22894050,22894181-22894270,22894484-22894613,
22895066-22895157,22895299-22895373,22895663-22895754,
22896496-22896586,22897541-22897574,22897745-22897791,
22899110-22899209,22899300-22899436,22900837-22901015,
22901146-22901188,22901264-22901297,22901839-22901948,
22902043-22902224,22903062-22903168,22903266-22903480
Length = 833
Score = 97.9 bits (233), Expect = 5e-21
Identities = 65/154 (42%), Positives = 84/154 (54%), Gaps = 2/154 (1%)
Frame = +1
Query: 61 RTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTS 240
+ R +TPGTV ILLAGR+ GKR TGPF N P+RR+ Q YVI TS
Sbjct: 70 KLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPIRRVNQAYVIATS 129
Query: 241 TKVDLGDFKLPAHLDDAYFXXXXXXXXXXXXXXQGEDIFATKKE--KYVPSEQRKADQKL 414
TKVD+ K+ DD YF +GE +F T+KE K +P + +K DQK
Sbjct: 130 TKVDISGVKVD-KFDDKYF---ARDKKAKAKKTEGE-LFETEKEATKNLP-DFKKDDQKA 183
Query: 415 VDEAVIKAIRLRPDKKTLRGYLRASFGLRSSQFP 516
VD +IKAI + PD L+ YL G R+S++P
Sbjct: 184 VDAELIKAIEVVPD---LKSYL----GARNSRWP 210
>03_05_0412 +
23993452-23994068,23996249-23996350,23996799-23996994,
23997075-23997259,23997394-23997498,23997625-23997722,
23997832-23998067,23998314-23998382,23999768-23999833,
24000513-24000611,24000688-24000750
Length = 611
Score = 29.9 bits (64), Expect = 1.4
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 221 RCGILRRGHALKAKGPVKSSRPLGNTPTSTT 129
RCG+ ++GH A GP + P ++ +TT
Sbjct: 23 RCGLPKKGHVCAAGGPAPTPSPSSSSGAATT 53
>07_03_1327 + 25833927-25834391,25834943-25835340,25835395-25836331
Length = 599
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -3
Query: 176 PVKSSRPLGNTPTSTTRLPACLPANRMHTVPGVRLGLVLR 57
P ++ P+ +TP+ T + CLPA+R T R +LR
Sbjct: 258 PTWTTSPILSTPSHTWQRSLCLPASRSFTPRKSRRDQLLR 297
>04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251
Length = 1821
Score = 27.5 bits (58), Expect = 7.5
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -3
Query: 176 PVKSSRPLGNTPTSTTRLPACLPANRMHTVPGVRLG 69
P+KS+ P GN TTRL + A R+ TV + LG
Sbjct: 440 PLKSNHPKGNMILVTTRLLSL--AQRIGTVKPIELG 473
>02_05_0902 +
32620668-32621209,32621847-32622258,32622471-32622675,
32622712-32622806,32622945-32623557,32623652-32623820,
32624392-32624749,32625226-32625336,32626207-32626561,
32627262-32627484,32627837-32628058,32628628-32628781
Length = 1152
Score = 27.5 bits (58), Expect = 7.5
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +1
Query: 355 FATKKEKYVPSEQRKADQKLVDEAVI----KAIRLRPDKKTLRGYLRASFGLRSS 507
FA ++K ++ +KA + E I KA+ L PD + L YL ++G R S
Sbjct: 314 FARFQDKVASTQPQKAARLQTTERKISILEKAVELNPDNEELLLYLLKAYGERDS 368
>03_06_0234 - 32535281-32535919,32536121-32536860,32536911-32536953
Length = 473
Score = 27.1 bits (57), Expect = 9.9
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 438 DQTPARQEDTPRLPQGLVRAPIESVPAPSA 527
D + ED P +P+ ++ P+E+VP P A
Sbjct: 222 DTVLGQDEDAP-VPKDVIPEPVEAVPTPKA 250
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,327,321
Number of Sequences: 37544
Number of extensions: 276523
Number of successful extensions: 870
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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