Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_F09
         (550 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)               92   3e-19
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)                      32   0.36 
SB_38173| Best HMM Match : PAN (HMM E-Value=0.0013)                    29   2.5  
SB_59148| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_8849| Best HMM Match : F-box (HMM E-Value=0.86)                     28   4.4  
SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.4  
SB_15425| Best HMM Match : PAN (HMM E-Value=0.00023)                   28   5.8  
SB_12882| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)
          Length = 112

 Score = 91.9 bits (218), Expect = 3e-19
 Identities = 53/120 (44%), Positives = 66/120 (55%), Gaps = 2/120 (1%)
 Frame = +1

Query: 178 PFAFNACPLRRIPQRYVIGTSTKVDLGDFKLPAH--LDDAYFXXXXXXXXXXXXXXQGED 351
           PF  N  PLRRIPQ YVI TST +D+ D KLP H   D++YF              + ED
Sbjct: 2   PFKINGVPLRRIPQSYVIATSTHIDVSDVKLPEHAFADESYF------KGEPKKKKRSED 55

Query: 352 IFATKKEKYVPSEQRKADQKLVDEAVIKAIRLRPDKKTLRGYLRASFGLRSSQFPHRLRF 531
           +F    E+  PSEQR ADQK VD+ ++  I   P+ K    YL + F LR  QFPH + F
Sbjct: 56  MFEEAAEEKKPSEQRIADQKAVDDQILPKISAVPNMKK---YLSSLFSLRKGQFPHDMVF 112


>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
          Length = 451

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +2

Query: 119 LASVSCSLECC--RVVCYSSLDLLLSTRVPCAGFR 217
           +A  SC + CC  RVVCYS   +  S RV C   R
Sbjct: 162 VACCSCRVACCSCRVVCYSCRVVCYSCRVACCSCR 196



 Score = 31.5 bits (68), Expect = 0.47
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +2

Query: 131 SCSLECC--RVVCYSSLDLLLSTRVPCAGFR 217
           SC + CC  RVVCYS   +  S RV C   R
Sbjct: 124 SCRIACCSCRVVCYSCRVVFCSCRVACCSCR 154



 Score = 31.1 bits (67), Expect = 0.62
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +2

Query: 131 SCSLECC--RVVCYSSLDLLLSTRVPCAGFR 217
           SC + CC  RVVCYS   +  S RV C   R
Sbjct: 187 SCRVACCSCRVVCYSCRVVFCSCRVACCSCR 217



 Score = 30.7 bits (66), Expect = 0.82
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +2

Query: 92  CAFCWRADTLASVSCSLEC--CRVVCYSSLDLLLSTRVPCAGFRSA 223
           C   + +  +A  SC + C  CRVVCYS      S RV C   R A
Sbjct: 202 CRVVFCSCRVACCSCRVVCYSCRVVCYSCRVACCSCRVVCYSCRVA 247



 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = +2

Query: 131 SCSLECC--RVVCYSSLDLLLSTRVPCAGFR 217
           SC + CC  RVVCYS      S RV C   R
Sbjct: 145 SCRVACCSCRVVCYSCRVACCSCRVACCSCR 175



 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = +2

Query: 119 LASVSCSLEC--CRVVCYSSLDLLLSTRVPCAGFR 217
           +A  SC + C  CRVVCYS      S RV C   R
Sbjct: 169 VACCSCRVVCYSCRVVCYSCRVACCSCRVVCYSCR 203



 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = +2

Query: 131 SCSLECC--RVVCYSSLDLLLSTRVPCAGFRSA 223
           SC + CC  RVVCYS      S RV C   R A
Sbjct: 229 SCRVACCSCRVVCYSCRVACCSCRVVCYSCRVA 261


>SB_38173| Best HMM Match : PAN (HMM E-Value=0.0013)
          Length = 340

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -3

Query: 188 KAKGPVKSSRPLGNTPTSTTRLPACLPANRMHTVP 84
           K+  P KS++P  + PT+ T LP   P  R+ ++P
Sbjct: 202 KSTKPTKSTKPTESKPTAPTSLPDQRPNCRLPSMP 236


>SB_59148| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 77  SLPAQCAFCWRADTLASVSCSLECCRVVC 163
           S+  QC   W A    S+S +++ C+ VC
Sbjct: 127 SVEKQCVVRWLASVRTSISTAVDVCKAVC 155


>SB_8849| Best HMM Match : F-box (HMM E-Value=0.86)
          Length = 1222

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 108 GQTRWQ-ACRARWSVAEWSATLHWTFCFQRVSPAQDSAALC 227
           G+ RW+ A +  W  + W   + +  C QRV    D  ALC
Sbjct: 178 GEMRWKLALKRNWLYSNWKCVVCYRNCSQRVDSHFD-VALC 217


>SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3889

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 188  KAKGPVKSSRPLGNTPTSTTRLPACLPANRMHTVPG 81
            + K PV +SR L N PT  T     +   + H +PG
Sbjct: 1009 RIKTPVPTSRLLLNVPTQNTAKSIIIQTYKKHALPG 1044


>SB_15425| Best HMM Match : PAN (HMM E-Value=0.00023)
          Length = 514

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -3

Query: 470 RSVFLSGRSLIAFITASSTSFWSALRCS-DGTYFSFLVAKMSSPC 339
           R VFL G S+IAF T SS+SF+S    +   + F  LVA+    C
Sbjct: 54  RGVFLYGVSIIAF-TFSSSSFYSHYGSTLINSTFKSLVAENPGDC 97


>SB_12882| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +2

Query: 23  VVLMARVSVNMCVGRDLTSL-PAQCAFCWRADTLASVSCSLECCRVVCYSSLDLLLSTRV 199
           V+  +RV + +C  R    L P++         + SVSC    C V+C S + ++L    
Sbjct: 83  VLCPSRVCIVLCPSRVCIVLCPSRVCIVLCPSRVVSVSCPYRVCIVLCPSCVCIVLCPSC 142

Query: 200 PC 205
            C
Sbjct: 143 VC 144


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,266,615
Number of Sequences: 59808
Number of extensions: 321418
Number of successful extensions: 902
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)