Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_F08
         (403 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    26   1.9  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    25   4.4  
SPBC725.02 |mpr1|spy1|response regulator phosphotransferase |Sch...    24   7.7  
SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomy...    24   7.7  

>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -3

Query: 353 WRLRRLSIVFLLSVFLWVLDTLIKCFS 273
           W L +LS  F L  FLW L T +  FS
Sbjct: 452 WSLGKLSKPFQLITFLWNLFTAVILFS 478


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 353 WRLRRLSIVFLLSVFLWVLDTL 288
           WR+RR  I+ L+ VFL  L T+
Sbjct: 401 WRMRRYLIIQLIRVFLSGLSTV 422


>SPBC725.02 |mpr1|spy1|response regulator phosphotransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -1

Query: 127 VSSIGNVLKNHIVIIRVTKL-KVWDNINNF 41
           +SS+G+ LK    ++ +TK+ KV + I N+
Sbjct: 216 LSSLGHFLKGSSAVLGLTKMRKVCERIQNY 245


>SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 276

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +2

Query: 269 KQKNILLMCRVPIKIQTIRKQWKA 340
           K+++I L+ ++P  +Q   + WKA
Sbjct: 68  KREDITLITKIPDSLQGFERTWKA 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,673,412
Number of Sequences: 5004
Number of extensions: 31541
Number of successful extensions: 79
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)