Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_F08
         (403 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0607 + 4464669-4465367,4466212-4467369,4468005-4469114,446...    28   3.2  
10_08_0039 - 14355746-14355772,14356713-14356772,14356873-143569...    27   5.6  
10_01_0062 - 818396-818538,819482-819693,819936-820420,820540-82...    26   9.7  

>03_01_0607 +
           4464669-4465367,4466212-4467369,4468005-4469114,
           4469273-4469314,4469496-4469572,4469671-4469755,
           4469818-4469901,4469988-4470089,4470181-4470279,
           4470794-4470919
          Length = 1193

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 18/43 (41%), Positives = 26/43 (60%)
 Frame = +3

Query: 45  LLILSHTLSLVTLIITIWFLSTFPIELTISLSTMPSGLNVQRL 173
           LL LS TLSLVT   TI+ +S + +E T+  S   +   V+R+
Sbjct: 75  LLALS-TLSLVTAAGTIYHISAWDLEGTVERSRASAARVVERM 116


>10_08_0039 -
           14355746-14355772,14356713-14356772,14356873-14356944,
           14357042-14357109,14357288-14357350,14357533-14357669,
           14357950-14357987
          Length = 154

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 8/37 (21%)
 Frame = +3

Query: 90  TIWFLSTFP--------IELTISLSTMPSGLNVQRLL 176
           +IWFLS+FP         +LTI+L    S +NV++L+
Sbjct: 71  SIWFLSSFPDISCMARRAKLTINLKLRKSTINVEQLI 107


>10_01_0062 -
           818396-818538,819482-819693,819936-820420,820540-820696,
           820787-820924,821127-821703,821978-822018,822679-822809
          Length = 627

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 358 LPGVYAGFPLFSYCLYFY 305
           L G   GF +F+YCLY+Y
Sbjct: 513 LCGGSTGFFVFAYCLYYY 530


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,247,981
Number of Sequences: 37544
Number of extensions: 178390
Number of successful extensions: 401
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)