Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_F08
         (403 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59024| Best HMM Match : 7tm_1 (HMM E-Value=5.2e-19)                 33   0.087
SB_10419| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.5  
SB_51674| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.3  
SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082)                 27   5.7  
SB_59568| Best HMM Match : TPP_enzyme_C (HMM E-Value=3.6e-34)          26   10.0 

>SB_59024| Best HMM Match : 7tm_1 (HMM E-Value=5.2e-19)
          Length = 423

 Score = 33.1 bits (72), Expect = 0.087
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = -1

Query: 397 RQETRSVVLSLELLPGVYAGFPLFSYCLYFYGYSTH**NVFLFMLIIHSYRRG 239
           R   R  VL L L  G   G    ++ ++F  YS    N F+FM+    YRRG
Sbjct: 314 RSRNRKPVLPLCLGMGCPCGMQELTFLVFFAAYSYAAINPFIFMIFNEKYRRG 366


>SB_10419| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 848

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -1

Query: 271 FMLIIHSYRRGNITERGVFSRHHYRSPNYPHYNNLWTFKPDGIVL 137
           F  +++SYR  N  +R   +  H RS + P+  N W  K +  V+
Sbjct: 73  FSQVVYSYRDQNTADR---AGGHVRSASLPNITNAWEEKAESPVM 114


>SB_51674| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 833

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 9/42 (21%), Positives = 24/42 (57%)
 Frame = -1

Query: 211 RHHYRSPNYPHYNNLWTFKPDGIVLKLIVSSIGNVLKNHIVI 86
           +HH++   + H++       +GI++  I+ +   ++ N+I+I
Sbjct: 254 QHHHQQQQHHHHHEHIIITNNGIIMNNIIITNNGIIMNNIII 295


>SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082)
          Length = 1304

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 10/42 (23%), Positives = 24/42 (57%)
 Frame = +1

Query: 238 YPVCNYE*LT*TEKHFINVSSTHKNTDNKKTMESRRKRQVRA 363
           YP+ +       ++H+IN+  TH+N+   +T+  +  ++ +A
Sbjct: 13  YPISSSTLFPNAKRHYINLEMTHRNSKCTETLFRKSAKKSKA 54


>SB_59568| Best HMM Match : TPP_enzyme_C (HMM E-Value=3.6e-34)
          Length = 521

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = -1

Query: 361 LLPGVYAGFPLFSYCLYFYGYSTH**NVFLFMLIIHSYRRG 239
           L+PGV A   L    L F GY       FL+ L  HS   G
Sbjct: 11  LIPGVIAALALVFLVLSFIGYKLKIHLKFLYKLDEHSTHHG 51


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,372,156
Number of Sequences: 59808
Number of extensions: 230254
Number of successful extensions: 588
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 715479706
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)