Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_F08
         (403 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28991-5|AAK68311.1|  234|Caenorhabditis elegans Hypothetical pr...    27   6.7  
U10438-8|AAU87835.1|  627|Caenorhabditis elegans Hypothetical pr...    26   8.8  
AC006603-4|AAF39747.2|  379|Caenorhabditis elegans Hypothetical ...    26   8.8  

>U28991-5|AAK68311.1|  234|Caenorhabditis elegans Hypothetical
           protein F08F8.8 protein.
          Length = 234

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 244 RGNITERGVFSRHHYRSPNYPHYNNL 167
           R  I  RG+ +R H+ S  YP  NNL
Sbjct: 177 RQGINLRGISTRLHHISKKYPAINNL 202


>U10438-8|AAU87835.1|  627|Caenorhabditis elegans Hypothetical
           protein B0280.2 protein.
          Length = 627

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 403 KSRQETRSVVLSLELLPGVYAGFPLFSYC 317
           K+ Q  R  VL  EL  G Y  FP  ++C
Sbjct: 363 KNHQNLREEVLPFELEVGNYVSFPNHTHC 391


>AC006603-4|AAF39747.2|  379|Caenorhabditis elegans Hypothetical
           protein B0524.2 protein.
          Length = 379

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 7/33 (21%)
 Frame = -1

Query: 100 NHIVIIRVTKLKVWDN--INNFH-----FDCLL 23
           N ++ + VTKLK W N  I+NF       DCL+
Sbjct: 229 NDLLFVSVTKLKTWKNELISNFESKIDLIDCLM 261


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,179,477
Number of Sequences: 27780
Number of extensions: 174427
Number of successful extensions: 570
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)