Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_F07
(489 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P52813 Cluster: 40S ribosomal protein S3a; n=17; Eukary... 246 2e-64
UniRef50_P61247 Cluster: 40S ribosomal protein S3a; n=209; Eukar... 211 5e-54
UniRef50_A7NWS5 Cluster: Chromosome chr5 scaffold_2, whole genom... 209 3e-53
UniRef50_Q54ZW5 Cluster: 40S ribosomal protein S3A; n=2; Dictyos... 178 5e-44
UniRef50_Q5EMY6 Cluster: 40S ribosomal protein S1-like protein; ... 172 4e-42
UniRef50_UPI000049A095 Cluster: 40S ribosomal protein S3a; n=3; ... 159 3e-38
UniRef50_Q9U4U0 Cluster: Antigen; n=10; Trypanosomatidae|Rep: An... 152 4e-36
UniRef50_Q23DE3 Cluster: Ribosomal S3Ae family protein; n=1; Tet... 151 6e-36
UniRef50_A0CCR3 Cluster: Chromosome undetermined scaffold_168, w... 137 1e-31
UniRef50_UPI000041A636 Cluster: PREDICTED: similar to ribosomal ... 134 8e-31
UniRef50_UPI00005042B8 Cluster: UPI00005042B8 related cluster; n... 120 2e-26
UniRef50_UPI00015608D3 Cluster: PREDICTED: similar to ribosomal ... 119 4e-26
UniRef50_Q7QT21 Cluster: GLP_675_17761_17015; n=1; Giardia lambl... 112 3e-24
UniRef50_A3F4R3 Cluster: Ribosomal protein S3a; n=1; Taenia asia... 99 5e-20
UniRef50_A2FDS0 Cluster: Ribosomal protein S3Ae, putative; n=4; ... 97 1e-19
UniRef50_Q9AW90 Cluster: 40S ribosomal Protein S3a; n=1; Guillar... 79 7e-14
UniRef50_Q8SS05 Cluster: 40S RIBOSOMAL PROTEIN S3A; n=1; Encepha... 78 9e-14
UniRef50_Q0W2K9 Cluster: 30S ribosomal protein S3AE; n=2; Euryar... 71 1e-11
UniRef50_Q8Q0F2 Cluster: 30S ribosomal protein S3Ae; n=6; Euryar... 66 5e-10
UniRef50_A7D401 Cluster: Ribosomal protein S3Ae; n=2; Halorubrum... 63 4e-09
UniRef50_Q8TVD1 Cluster: 30S ribosomal protein S3Ae; n=1; Methan... 61 1e-08
UniRef50_O27964 Cluster: 30S ribosomal protein S3Ae; n=1; Archae... 61 1e-08
UniRef50_Q3SAA8 Cluster: SSU ribosomal protein S3AE; n=2; enviro... 60 3e-08
UniRef50_Q8ZT21 Cluster: 30S ribosomal protein S3Ae; n=4; Pyroba... 60 3e-08
UniRef50_Q6LZG0 Cluster: 30S ribosomal protein S3Ae; n=6; Methan... 58 8e-08
UniRef50_Q9YCV8 Cluster: 30S ribosomal protein S3Ae; n=12; Archa... 55 1e-06
UniRef50_Q5V296 Cluster: 30S ribosomal protein S3Ae; n=4; Haloba... 54 2e-06
UniRef50_A5UKY8 Cluster: Small subunit ribosomal protein S3Ae; n... 53 3e-06
UniRef50_A7QAT4 Cluster: Chromosome chr5 scaffold_72, whole geno... 52 5e-06
UniRef50_A4GI78 Cluster: Ribosomal protein S3AE; n=1; uncultured... 51 1e-05
UniRef50_A4YCU2 Cluster: Ribosomal protein S3Ae; n=1; Metallosph... 51 2e-05
UniRef50_A2SQ57 Cluster: Ribosomal protein S3Ae; n=1; Methanocor... 48 1e-04
UniRef50_A0RTS7 Cluster: Ribosomal protein S3AE; n=2; Thermoprot... 47 2e-04
UniRef50_A4D1I1 Cluster: Similar to ribosomal protein S3a; 40S r... 41 0.013
UniRef50_Q6KYU3 Cluster: 30S ribosomal protein S3Ae; n=2; Thermo... 40 0.022
UniRef50_Q978Z2 Cluster: 30S ribosomal protein S3Ae; n=2; Thermo... 39 0.052
UniRef50_Q3LW71 Cluster: Ribosomal protein S3a; n=1; Bigelowiell... 39 0.069
UniRef50_Q81B91 Cluster: Putative uncharacterized protein; n=4; ... 33 3.4
UniRef50_A7ANW6 Cluster: Putative uncharacterized protein; n=1; ... 32 6.0
UniRef50_A3PDQ5 Cluster: Putative uncharacterized protein; n=1; ... 32 7.9
>UniRef50_P52813 Cluster: 40S ribosomal protein S3a; n=17;
Eukaryota|Rep: 40S ribosomal protein S3a - Anopheles
gambiae (African malaria mosquito)
Length = 269
Score = 246 bits (602), Expect = 2e-64
Identities = 113/139 (81%), Positives = 127/139 (91%)
Frame = +3
Query: 72 IVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDA 251
+VDPFTRKDWYDVKAP+MF RQVG TLVNRTQGTKIAS+GLKGRVFEVSLADLQ + DA
Sbjct: 21 VVDPFTRKDWYDVKAPNMFKNRQVGKTLVNRTQGTKIASDGLKGRVFEVSLADLQNEPDA 80
Query: 252 ERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 431
ERSFRKF+L+AE V GR+VL NFHGM LTTDKLR MVKKWQTLIE ++DVKTTDG++LRV
Sbjct: 81 ERSFRKFKLVAESVNGRDVLTNFHGMALTTDKLRSMVKKWQTLIECSVDVKTTDGFMLRV 140
Query: 432 YCIGFTNKDTLSQRKTCYA 488
+CIGFT KD++SQRKTCYA
Sbjct: 141 FCIGFTIKDSMSQRKTCYA 159
>UniRef50_P61247 Cluster: 40S ribosomal protein S3a; n=209;
Eukaryota|Rep: 40S ribosomal protein S3a - Homo sapiens
(Human)
Length = 264
Score = 211 bits (516), Expect = 5e-54
Identities = 99/139 (71%), Positives = 116/139 (83%)
Frame = +3
Query: 72 IVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDA 251
+VDPF++KDWYDVKAP+MF R +G TLV RTQGTKIAS+GLKGRVFEVSLADLQ D
Sbjct: 21 VVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQND--- 77
Query: 252 ERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 431
E +FRKF+LI EDVQG+N L NFHGMDLT DK+ MVKKWQT+IEA++DVKTTDGY+LR+
Sbjct: 78 EVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRL 137
Query: 432 YCIGFTNKDTLSQRKTCYA 488
+C+GFT K RKT YA
Sbjct: 138 FCVGFTKKRNNQIRKTSYA 156
>UniRef50_A7NWS5 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=3; core eudicotyledons|Rep:
Chromosome chr5 scaffold_2, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 656
Score = 209 bits (510), Expect = 3e-53
Identities = 98/137 (71%), Positives = 113/137 (82%)
Frame = +3
Query: 78 DPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAER 257
DPF +KDWYD+KAPS+F R VG TLV+RTQGTKIASEGLK RVFE+SLADLQAD D +
Sbjct: 417 DPFAKKDWYDIKAPSVFEVRNVGKTLVSRTQGTKIASEGLKHRVFEISLADLQADED--Q 474
Query: 258 SFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVYC 437
++RK RL AEDVQGRNVL NF GMD TTDKLR +V+KWQTLIEA++DVKTTD Y LR++C
Sbjct: 475 AYRKIRLRAEDVQGRNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRLFC 534
Query: 438 IGFTNKDTLSQRKTCYA 488
I FT K +KTCYA
Sbjct: 535 IAFTKKRVNQNKKTCYA 551
>UniRef50_Q54ZW5 Cluster: 40S ribosomal protein S3A; n=2;
Dictyostelium discoideum|Rep: 40S ribosomal protein S3A
- Dictyostelium discoideum AX4
Length = 273
Score = 178 bits (434), Expect = 5e-44
Identities = 88/142 (61%), Positives = 109/142 (76%), Gaps = 4/142 (2%)
Frame = +3
Query: 75 VDPFTRKDWYDVKAPSMFTK----RQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQAD 242
VDPFTRK+WY V+AP+ F K +VG T VNRTQGTK+AS+GLKGRV+EVSLAD++
Sbjct: 16 VDPFTRKEWYVVRAPTQFFKSPADNKVGFTPVNRTQGTKLASDGLKGRVYEVSLADMK-- 73
Query: 243 SDAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYV 422
D + FRK +L AE+V+GRNVL NF+GMDLT+DKLR ++ KW TLIE +DVKTTDGY
Sbjct: 74 DDESQVFRKIKLRAEEVEGRNVLTNFYGMDLTSDKLRSLIHKWSTLIECFVDVKTTDGYF 133
Query: 423 LRVYCIGFTNKDTLSQRKTCYA 488
LRV+ I FT K ++KT YA
Sbjct: 134 LRVFAICFTKKGESQKKKTSYA 155
>UniRef50_Q5EMY6 Cluster: 40S ribosomal protein S1-like protein;
n=9; Dikarya|Rep: 40S ribosomal protein S1-like protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 256
Score = 172 bits (418), Expect = 4e-42
Identities = 80/137 (58%), Positives = 102/137 (74%)
Frame = +3
Query: 78 DPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAER 257
DPF RKDWY +KAP+ F R VG TLVNR+ G K A++ LKGR+FEVSLADLQ D D
Sbjct: 22 DPFARKDWYGIKAPAPFNIRDVGKTLVNRSSGMKNANDALKGRIFEVSLADLQKDED--H 79
Query: 258 SFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVYC 437
+FRK +L ++VQG+N L NFHG+D T+DKLR +V+KWQ+LIEAN+ VKTTD Y+LR++
Sbjct: 80 AFRKIKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFA 139
Query: 438 IGFTNKDTLSQRKTCYA 488
I T + +KT YA
Sbjct: 140 IAVTKRRPNQIKKTTYA 156
>UniRef50_UPI000049A095 Cluster: 40S ribosomal protein S3a; n=3;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S3a - Entamoeba histolytica HM-1:IMSS
Length = 257
Score = 159 bits (386), Expect = 3e-38
Identities = 75/139 (53%), Positives = 102/139 (73%)
Frame = +3
Query: 72 IVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDA 251
I +PF++K+WY+VK P F +R VG +VN+T GT+IASE LKGRV EV+LADL +
Sbjct: 22 IAEPFSKKEWYNVKVPKNFKRRTVGQIVVNKTAGTRIASEQLKGRVVEVNLADLMENEKF 81
Query: 252 ERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 431
KF+ EDV G++ L FHG+ LTTDKLR +VKKW TLIE ++DVKTTDG+++R+
Sbjct: 82 GAYNYKFK--CEDVNGKDCLMIFHGLKLTTDKLRSIVKKWCTLIETSVDVKTTDGHLIRI 139
Query: 432 YCIGFTNKDTLSQRKTCYA 488
+CIGFT++ + +KT YA
Sbjct: 140 FCIGFTSRKSNQIKKTSYA 158
>UniRef50_Q9U4U0 Cluster: Antigen; n=10; Trypanosomatidae|Rep:
Antigen - Leishmania major
Length = 264
Score = 152 bits (369), Expect = 4e-36
Identities = 64/137 (46%), Positives = 94/137 (68%)
Frame = +3
Query: 78 DPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAER 257
+ RK+WYDV AP+ F KRQ T+ N+TQGT+IA++ L+GRVFE +LADL + E
Sbjct: 23 ETMARKEWYDVVAPANFEKRQFAKTICNKTQGTRIAADVLRGRVFEANLADLNQSAGEEE 82
Query: 258 SFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVYC 437
++RK R ++VQGRN+L FH M++TTDK+ +++KW T +E ++VKT DGY +R++
Sbjct: 83 AYRKVRFTVQEVQGRNLLTQFHSMEVTTDKMANLLRKWCTTMETTVEVKTADGYTMRLFV 142
Query: 438 IGFTNKDTLSQRKTCYA 488
+ FT Q + CYA
Sbjct: 143 VAFTKPQANQQSRNCYA 159
>UniRef50_Q23DE3 Cluster: Ribosomal S3Ae family protein; n=1;
Tetrahymena thermophila SB210|Rep: Ribosomal S3Ae family
protein - Tetrahymena thermophila SB210
Length = 265
Score = 151 bits (367), Expect = 6e-36
Identities = 67/141 (47%), Positives = 101/141 (71%), Gaps = 3/141 (2%)
Frame = +3
Query: 75 VDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAE 254
+DP +RK+WYD +AP F+ + G TLV ++ G +IASE +KGRV E +LADL+ D+ +
Sbjct: 23 IDPLSRKEWYDFRAPIPFSSKSFGKTLVTKSSGNRIASEEIKGRVVESTLADLK-DNSND 81
Query: 255 RSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVY 434
+++RK +L+ ++V GRN +F+G+D+T D+L M++KWQTLIEA +D KT DGY++RV+
Sbjct: 82 KAWRKVKLVIDEVDGRNAKTSFYGLDITRDRLCSMIRKWQTLIEARVDCKTNDGYIIRVF 141
Query: 435 CIGFTNKDTL---SQRKTCYA 488
+ FT K + S TCYA
Sbjct: 142 TLAFTKKTSAGKQSSTSTCYA 162
>UniRef50_A0CCR3 Cluster: Chromosome undetermined scaffold_168,
whole genome shotgun sequence; n=4; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_168,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 291
Score = 137 bits (332), Expect = 1e-31
Identities = 63/138 (45%), Positives = 92/138 (66%)
Frame = +3
Query: 75 VDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAE 254
+DP RK+W+++ AP F G T +N++ GT +A+E +KGRV E SLADLQ SD +
Sbjct: 19 IDPLARKEWFELTAPVPFAAGGFGYTCINKSAGTVVATEAIKGRVVEASLADLQGQSD-Q 77
Query: 255 RSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVY 434
++RK +LI +DV+G +F+G+D T DK+ M+KK QTLIE ++ ++ DGY+LR++
Sbjct: 78 MAWRKVKLIIDDVEGTRCRTSFYGLDSTKDKIFGMIKKRQTLIETQVEARSQDGYILRIF 137
Query: 435 CIGFTNKDTLSQRKTCYA 488
I FT QRKT YA
Sbjct: 138 VIAFTKSIKNQQRKTTYA 155
>UniRef50_UPI000041A636 Cluster: PREDICTED: similar to ribosomal
protein S3a isoform 5; n=18; Eutheria|Rep: PREDICTED:
similar to ribosomal protein S3a isoform 5 - Homo
sapiens
Length = 211
Score = 134 bits (325), Expect = 8e-31
Identities = 69/114 (60%), Positives = 85/114 (74%)
Frame = +3
Query: 72 IVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDA 251
+VDPF++KDWYDV AP+MF R +G TLV RTQGTKIAS+ GRVFEVSLADLQ D
Sbjct: 21 VVDPFSKKDWYDVNAPAMFNIRNIGKTLVTRTQGTKIASD---GRVFEVSLADLQND--- 74
Query: 252 ERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTD 413
E +FRKF+LI EDVQG+N L NFHG+DLT+DK+ ++K I +V+T D
Sbjct: 75 EVAFRKFKLITEDVQGKNCLTNFHGVDLTSDKITSQIRKKMMEIMTR-EVQTND 127
>UniRef50_UPI00005042B8 Cluster: UPI00005042B8 related cluster; n=1;
Rattus norvegicus|Rep: UPI00005042B8 UniRef100 entry -
Rattus norvegicus
Length = 237
Score = 120 bits (288), Expect = 2e-26
Identities = 65/124 (52%), Positives = 82/124 (66%)
Frame = +3
Query: 90 RKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAERSFRK 269
+KD YDVKA +MF R +G T V R Q TK+ S GL G VFE SLA LQ D RK
Sbjct: 12 KKDRYDVKALTMFNVRNIGKTQVLRKQETKMVSVGLNGLVFEASLASLQNDKVV---VRK 68
Query: 270 FRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVYCIGFT 449
F+LI ED++G+N L N +GMDLT DK V KWQ ++EA+ DVKT D Y+L ++C+G+T
Sbjct: 69 FKLITEDMRGKNGLTNSYGMDLTWDKRCNKVIKWQ-MVEAHADVKTADYYLLCLFCVGYT 127
Query: 450 NKDT 461
T
Sbjct: 128 TNVT 131
>UniRef50_UPI00015608D3 Cluster: PREDICTED: similar to ribosomal
protein S3a; n=1; Equus caballus|Rep: PREDICTED: similar
to ribosomal protein S3a - Equus caballus
Length = 153
Score = 119 bits (286), Expect = 4e-26
Identities = 58/90 (64%), Positives = 69/90 (76%)
Frame = +3
Query: 75 VDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAE 254
VD ++KDWYD+KAP+MF R +G TLV RTQGTKIAS+GLKG VFE+SLADLQ D E
Sbjct: 22 VDQISKKDWYDMKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGGVFEMSLADLQND---E 78
Query: 255 RSFRKFRLIAEDVQGRNVLCNFHGMDLTTD 344
+FRKF+LI EDVQG+ L NF M L+ D
Sbjct: 79 VAFRKFKLITEDVQGKRCLINFRSMGLSCD 108
>UniRef50_Q7QT21 Cluster: GLP_675_17761_17015; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_675_17761_17015 - Giardia lamblia
ATCC 50803
Length = 248
Score = 112 bits (270), Expect = 3e-24
Identities = 53/136 (38%), Positives = 81/136 (59%)
Frame = +3
Query: 78 DPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAER 257
DP+ +K+WY V AP+ F R +G T V +T G ++A++ + RV+EV+L DL ++
Sbjct: 20 DPYLKKEWYPVIAPAHFKSRHIGQTPVTKTAGLRVATDVINHRVYEVNLGDLNPGAEDLN 79
Query: 258 SFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVYC 437
KF L + V L NFHGMD+T K + +K I+ +D+ TTDGY+LRV+
Sbjct: 80 GNTKFYLQTQLVSDGKCLTNFHGMDITRHKYGSLFRKGCDCIDVFMDIPTTDGYLLRVFV 139
Query: 438 IGFTNKDTLSQRKTCY 485
I FT++ +RK C+
Sbjct: 140 IAFTDRFRFQRRKNCH 155
>UniRef50_A3F4R3 Cluster: Ribosomal protein S3a; n=1; Taenia
asiatica|Rep: Ribosomal protein S3a - Taenia asiatica
(Asian tapeworm)
Length = 183
Score = 99.1 bits (236), Expect = 5e-20
Identities = 48/76 (63%), Positives = 55/76 (72%)
Frame = +3
Query: 261 FRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVYCI 440
FRKF+L EDVQGR+ L NFHGMDLT DKL MV KWQ+ IEA++DVKTTDGY LR + I
Sbjct: 7 FRKFKLQVEDVQGRHCLTNFHGMDLTHDKLCGMVLKWQSTIEAHVDVKTTDGYTLRFFVI 66
Query: 441 GFTNKDTLSQRKTCYA 488
FT K Q+ YA
Sbjct: 67 AFTKKQE-DQKSHAYA 81
>UniRef50_A2FDS0 Cluster: Ribosomal protein S3Ae, putative; n=4;
Trichomonas vaginalis G3|Rep: Ribosomal protein S3Ae,
putative - Trichomonas vaginalis G3
Length = 247
Score = 97.5 bits (232), Expect = 1e-19
Identities = 56/139 (40%), Positives = 84/139 (60%), Gaps = 2/139 (1%)
Frame = +3
Query: 78 DPFTRKDWYDVKAPSMFT-KRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQAD-SDA 251
D F +K+W V P+ FT KR +G T+ N+ ++ + + RV+E+S AD+ D S A
Sbjct: 18 DSFIKKEWRHVLVPAYFTGKRDIGVTVSNKCARGRVPMDYVNNRVWELSHADMVNDLSHA 77
Query: 252 ERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 431
R F +R IA G V F GM LT DKL +++K++T+I+A++D KT DG++LR+
Sbjct: 78 YRLF-SWRSIAA---GSEVYTQFAGMRLTHDKLDSIMRKYRTMIDASVDAKTADGFILRL 133
Query: 432 YCIGFTNKDTLSQRKTCYA 488
+ IGFT K S + YA
Sbjct: 134 FTIGFTKKLANSHKNHTYA 152
>UniRef50_Q9AW90 Cluster: 40S ribosomal Protein S3a; n=1; Guillardia
theta|Rep: 40S ribosomal Protein S3a - Guillardia theta
(Cryptomonas phi)
Length = 219
Score = 78.6 bits (185), Expect = 7e-14
Identities = 42/136 (30%), Positives = 70/136 (51%)
Frame = +3
Query: 78 DPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAER 257
D +R++ V AP +F + +G TL+ + + + ++++VSLAD+ E
Sbjct: 19 DVNSRQELIKVYAPDIFDSKLIGKTLIKKRNPAD-ENSSVDNKIYQVSLADILGKE--EF 75
Query: 258 SFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVYC 437
S F + + FHG+ LT DK+ ++KKW TLIE ++ KT DGY L+++
Sbjct: 76 SSINFNFKSLKIFNNECFTKFHGLTLTRDKICSLIKKWHTLIEVEVNFKTKDGYFLKLFL 135
Query: 438 IGFTNKDTLSQRKTCY 485
I + K + KT Y
Sbjct: 136 IAQSKKPKNMKSKTVY 151
>UniRef50_Q8SS05 Cluster: 40S RIBOSOMAL PROTEIN S3A; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S3A
- Encephalitozoon cuniculi
Length = 189
Score = 78.2 bits (184), Expect = 9e-14
Identities = 40/95 (42%), Positives = 57/95 (60%)
Frame = +3
Query: 201 GRVFEVSLADLQADSDAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTL 380
GR ++V+ ADL ++D RKF D++G + F GM+LT+DK + M+KKW TL
Sbjct: 15 GRRYDVNQADLTGNNDV--GHRKFIFKIGDIKGSECVGFFDGMELTSDKHKAMIKKWHTL 72
Query: 381 IEANIDVKTTDGYVLRVYCIGFTNKDTLSQRKTCY 485
IEA D+ DG V RV+ +G T + +KTCY
Sbjct: 73 IEAQKDIVAKDGSVFRVFVMGVTRRHPGYVKKTCY 107
>UniRef50_Q0W2K9 Cluster: 30S ribosomal protein S3AE; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S3AE -
Uncultured methanogenic archaeon RC-I
Length = 225
Score = 70.9 bits (166), Expect = 1e-11
Identities = 46/127 (36%), Positives = 68/127 (53%)
Frame = +3
Query: 75 VDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAE 254
VD F K+WY V AP+ F + +G TL + G I GRV E +L D+ D +
Sbjct: 9 VDAFRAKNWYQVIAPAEFNRANIGETLAD-DPGKMI------GRVMESTLGDVTGDWTKQ 61
Query: 255 RSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVY 434
FR+ E++ G + +F G +LT D +R +VK+ + I+AN+ V T DG+ +RV
Sbjct: 62 NIKMIFRI--EEIGGNSAYTSFLGHELTRDYMRSLVKRRTSKIDANVVVTTKDGFKVRVK 119
Query: 435 CIGFTNK 455
I T K
Sbjct: 120 PIVLTVK 126
>UniRef50_Q8Q0F2 Cluster: 30S ribosomal protein S3Ae; n=6;
Euryarchaeota|Rep: 30S ribosomal protein S3Ae -
Methanosarcina mazei (Methanosarcina frisia)
Length = 204
Score = 65.7 bits (153), Expect = 5e-10
Identities = 43/133 (32%), Positives = 71/133 (53%)
Frame = +3
Query: 75 VDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAE 254
+D + K+WY+++AP+ + VGTT+ L GR E ++ +L +D
Sbjct: 10 LDGWKSKEWYNIEAPAYLNRVIVGTTMAGDPSL-------LVGRNVETTVGELT--NDMT 60
Query: 255 RSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVY 434
++ K L +V G + G +LTTD +R +VK+ + I+AN+DV+T DG+V+RV
Sbjct: 61 KNNTKVILRVNNVVGDIATTDLMGHELTTDYVRSIVKRQTSRIDANVDVRTKDGFVIRVK 120
Query: 435 CIGFTNKDTLSQR 473
FT K S +
Sbjct: 121 PTCFTIKRARSSQ 133
>UniRef50_A7D401 Cluster: Ribosomal protein S3Ae; n=2;
Halorubrum|Rep: Ribosomal protein S3Ae - Halorubrum
lacusprofundi ATCC 49239
Length = 215
Score = 62.9 bits (146), Expect = 4e-09
Identities = 39/122 (31%), Positives = 60/122 (49%)
Frame = +3
Query: 90 RKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAERSFRK 269
+K WY V AP F ++++G TL + + GR +L +L DS A +
Sbjct: 12 QKRWYSVLAPEQFDRQELGETLAEEP-------DQVVGRTITTTLGELTGDSGANNTKLT 64
Query: 270 FRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVYCIGFT 449
F++ DV F +LT D LR +V++ + +EA+I V TTD Y +RV + T
Sbjct: 65 FKIT--DVGSDTAYTEFIKYELTRDYLRSLVRRGASKVEASITVLTTDDYRIRVQPVALT 122
Query: 450 NK 455
K
Sbjct: 123 TK 124
>UniRef50_Q8TVD1 Cluster: 30S ribosomal protein S3Ae; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S3Ae -
Methanopyrus kandleri
Length = 211
Score = 61.3 bits (142), Expect = 1e-08
Identities = 42/126 (33%), Positives = 60/126 (47%)
Frame = +3
Query: 78 DPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAER 257
D + K WY + AP MF +VG T + E + GRV E +L D+ D
Sbjct: 4 DKWKDKVWYTILAPDMFDNVEVGETPADDP-------EKVIGRVLETTLGDVLDDITKHH 56
Query: 258 SFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVYC 437
FR+ DV+G F G L D +R +V++ + I+ IDV T DGY +RV
Sbjct: 57 IKVFFRIY--DVEGTTAYSKFEGHRLMRDYVRSLVRRGTSRIDGVIDVVTKDGYKVRVAG 114
Query: 438 IGFTNK 455
+ FT +
Sbjct: 115 LAFTTR 120
>UniRef50_O27964 Cluster: 30S ribosomal protein S3Ae; n=1;
Archaeoglobus fulgidus|Rep: 30S ribosomal protein S3Ae -
Archaeoglobus fulgidus
Length = 211
Score = 61.3 bits (142), Expect = 1e-08
Identities = 39/135 (28%), Positives = 65/135 (48%)
Frame = +3
Query: 72 IVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDA 251
+ D +T K W+ + AP F ++G T + +K+ GR E +LA+L D
Sbjct: 10 VKDKWTLKKWFTLIAPEYFGMAELGETPAD--DASKVV-----GRTVETTLAELTNDYSN 62
Query: 252 ERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 431
+ +++K V G N F +LT + L + ++ + IE +DV T DGY LRV
Sbjct: 63 QNTYKKLIFKVYRVAGDNAYTKFWRFELTREYLNSLTRRRTSKIEDIVDVTTADGYKLRV 122
Query: 432 YCIGFTNKDTLSQRK 476
+ FT + + +K
Sbjct: 123 KSVVFTVRRCKTSQK 137
>UniRef50_Q3SAA8 Cluster: SSU ribosomal protein S3AE; n=2;
environmental samples|Rep: SSU ribosomal protein S3AE -
uncultured euryarchaeote Alv-FOS1
Length = 227
Score = 59.7 bits (138), Expect = 3e-08
Identities = 40/134 (29%), Positives = 67/134 (50%)
Frame = +3
Query: 78 DPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAER 257
D + K WY + P F+ +++G T + K+ GRV E +L DL +
Sbjct: 15 DKWRSKVWYTIITPETFSSKEIGMTPADDPD--KVI-----GRVAESTLYDLSGNFKKMH 67
Query: 258 SFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVYC 437
F++ VQG N F G D+TTD +R M+++ ++ I+ +V+T+DGY +RV
Sbjct: 68 VKLYFKI--NRVQGTNAYTRFIGHDMTTDYIRRMIRRRRSRIDMIFNVETSDGYRMRVKV 125
Query: 438 IGFTNKDTLSQRKT 479
+ ++ S KT
Sbjct: 126 LTVPDRRIKSSIKT 139
>UniRef50_Q8ZT21 Cluster: 30S ribosomal protein S3Ae; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S3Ae -
Pyrobaculum aerophilum
Length = 221
Score = 59.7 bits (138), Expect = 3e-08
Identities = 41/124 (33%), Positives = 59/124 (47%)
Frame = +3
Query: 78 DPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAER 257
DP+ K W+ V APS + N Q L R EVSL D+ D
Sbjct: 20 DPWALKKWFSVYAPSYLGGVFLAEVPANEAQK-------LLMRTLEVSLYDITKDISHLP 72
Query: 258 SFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVYC 437
KF++ V+G L F G++LT D +R +V+K + + A +VKT DG V+R+
Sbjct: 73 IKLKFQI--HRVEGLKALTRFKGLELTRDYIRSLVRKGTSKVTAITEVKTKDGMVMRIAV 130
Query: 438 IGFT 449
+G T
Sbjct: 131 LGIT 134
>UniRef50_Q6LZG0 Cluster: 30S ribosomal protein S3Ae; n=6;
Methanococcales|Rep: 30S ribosomal protein S3Ae -
Methanococcus maripaludis
Length = 225
Score = 58.4 bits (135), Expect = 8e-08
Identities = 39/134 (29%), Positives = 61/134 (45%)
Frame = +3
Query: 78 DPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAER 257
D + K WYD+ P F +G T N L GR+ E+SL DL +
Sbjct: 17 DTWKSKVWYDIYTPQSFGGDVIGQTPANDPAN-------LIGRISEISLRDLTNEHSKHM 69
Query: 258 SFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVYC 437
+ F++ + V G N F G D T + L+ V++ ++ I A ++V+T DG+ +RV
Sbjct: 70 TRMYFKV--DGVSGNNATSQFVGHDTTREYLKSQVRRRRSKINAIVEVRTKDGFKVRVKA 127
Query: 438 IGFTNKDTLSQRKT 479
+ T KT
Sbjct: 128 LVLTAVRARDHHKT 141
>UniRef50_Q9YCV8 Cluster: 30S ribosomal protein S3Ae; n=12;
Archaea|Rep: 30S ribosomal protein S3Ae - Aeropyrum
pernix
Length = 214
Score = 54.8 bits (126), Expect = 1e-06
Identities = 38/136 (27%), Positives = 64/136 (47%)
Frame = +3
Query: 72 IVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDA 251
I D + K W+ V AP +F + +GTT + + L GRV E +L D+ D
Sbjct: 6 IRDTWRLKKWFKVVAPPLFGETVLGTTPADDP-------DKLIGRVMETTLFDITGDYSY 58
Query: 252 ERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 431
F+++ V+G F G +L D +R + ++ + + +V T DGY LRV
Sbjct: 59 VHVKMYFQVVR--VEGDTAYTRFKGHELLRDYIRGLTRRKSSKVTGIFNVWTKDGYGLRV 116
Query: 432 YCIGFTNKDTLSQRKT 479
+ FT + + +K+
Sbjct: 117 TAMAFTRQRCKTSQKS 132
>UniRef50_Q5V296 Cluster: 30S ribosomal protein S3Ae; n=4;
Halobacteriaceae|Rep: 30S ribosomal protein S3Ae -
Haloarcula marismortui (Halobacterium marismortui)
Length = 213
Score = 53.6 bits (123), Expect = 2e-06
Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 1/130 (0%)
Frame = +3
Query: 90 RKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAERSFRK 269
+K WY V+AP F + +G T + + GR E +L +L D+ +
Sbjct: 12 QKRWYTVQAPEQFDREVLGKTPAEEP-------DKVLGRTIETTLGELTNDASENNTKLT 64
Query: 270 FRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVYCIGFT 449
F++ +V + F +LT D LR +V++ + +EA I V TTD Y +++ + T
Sbjct: 65 FKI--NEVASDSAYTEFIRHELTRDYLRSLVRRGSSKVEAYITVLTTDDYRVQIQPVAVT 122
Query: 450 NKDT-LSQRK 476
K SQ K
Sbjct: 123 TKKADASQEK 132
>UniRef50_A5UKY8 Cluster: Small subunit ribosomal protein S3Ae; n=2;
Methanobacteriaceae|Rep: Small subunit ribosomal protein
S3Ae - Methanobrevibacter smithii (strain PS / ATCC
35061 / DSM 861)
Length = 193
Score = 53.2 bits (122), Expect = 3e-06
Identities = 35/133 (26%), Positives = 63/133 (47%)
Frame = +3
Query: 78 DPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAER 257
D + K WY +K P F +++G T + L GR EV++ +L D +
Sbjct: 12 DTWKEKSWYTIKTPVNFEDKEIGETPARDP-------DYLIGRGVEVTMRELSGDFS--K 62
Query: 258 SFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVYC 437
+ K R ++V G F G TTD +R M+++ + I+A+ VKT D ++++
Sbjct: 63 QYIKLRFEIDNVAGDVANTKFTGHKTTTDYVRSMIRRGTSRIDASSVVKTKDDRKVKLHV 122
Query: 438 IGFTNKDTLSQRK 476
+ T + S ++
Sbjct: 123 LAVTTRRAKSSQQ 135
>UniRef50_A7QAT4 Cluster: Chromosome chr5 scaffold_72, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr5 scaffold_72, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 168
Score = 52.4 bits (120), Expect = 5e-06
Identities = 34/96 (35%), Positives = 53/96 (55%)
Frame = -2
Query: 299 SLDILSDKSELAERPFRITISLEISKGDLKNTPL*TLRCNFCSLGAIDKGGAHLSLGEHG 120
SL +L +S+L I I L IS+G+LK++ L R + S + +KG A++S E
Sbjct: 61 SLHVLGSQSDLPVG--MILIVLNISQGNLKHSVLEPFRGDLGSQSSANKGFANISDAEDR 118
Query: 119 RRFNIVPVFTGERINNLLLNTLLASFRKAFIFTDRH 12
RR N++PV +R+ LLL++L +F D H
Sbjct: 119 RRLNVIPVLLSKRVGCLLLSSLF-PLGNPLVFPDDH 153
>UniRef50_A4GI78 Cluster: Ribosomal protein S3AE; n=1; uncultured
marine bacterium HF10_29C11|Rep: Ribosomal protein S3AE
- uncultured marine bacterium HF10_29C11
Length = 322
Score = 51.2 bits (117), Expect = 1e-05
Identities = 34/127 (26%), Positives = 65/127 (51%), Gaps = 1/127 (0%)
Frame = +3
Query: 78 DPFTRKDWYDVKAPSM-FTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAE 254
D + K WY ++AP + + +G T+ + E + GR++E++ + D
Sbjct: 21 DKWKTKRWYTIRAPRHPWNYQNIGETIGE-------SDEHIIGRIYEMTQQEFNGDFTKM 73
Query: 255 RSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVY 434
+FR ++E V G++ L F G T+ +R +++++ I+ IDV T DGY++R+
Sbjct: 74 HVMLRFR-VSETV-GQDALTTFVGHHHQTNHIRRQIRRYRGKIDDVIDVVTEDGYLVRIK 131
Query: 435 CIGFTNK 455
+ T K
Sbjct: 132 PLIITQK 138
>UniRef50_A4YCU2 Cluster: Ribosomal protein S3Ae; n=1;
Metallosphaera sedula DSM 5348|Rep: Ribosomal protein
S3Ae - Metallosphaera sedula DSM 5348
Length = 216
Score = 50.8 bits (116), Expect = 2e-05
Identities = 32/124 (25%), Positives = 57/124 (45%)
Frame = +3
Query: 78 DPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAER 257
D + K W+ + +P +F + +G+T T GR E +L DL D
Sbjct: 16 DKWKMKKWFSIYSPKVFGEVSLGSTPAFDVSQTM-------GRKVETTLYDLTGDFSTVY 68
Query: 258 SFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVYC 437
F+++ + G + F G +L+ D +R +V++ + I +D+ T DG+ LRV
Sbjct: 69 VHLYFKVVRNE--GERLFTEFAGHELSRDYVRSLVRRKSSKINKVVDITTKDGFTLRVKT 126
Query: 438 IGFT 449
+ T
Sbjct: 127 LALT 130
>UniRef50_A2SQ57 Cluster: Ribosomal protein S3Ae; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S3Ae - Methanocorpusculum labreanum (strain ATCC 43576 /
DSM 4855 / Z)
Length = 206
Score = 47.6 bits (108), Expect = 1e-04
Identities = 39/134 (29%), Positives = 63/134 (47%), Gaps = 2/134 (1%)
Frame = +3
Query: 75 VDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAE 254
V+ + K+WY V AP K+ +G + + E + GRV VSL +L D +
Sbjct: 12 VEGWKAKNWYKVHAPEFLGKQFIGEIISSNP-------ENVPGRVLTVSLGELIQDYSKQ 64
Query: 255 RSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDG-YVLRV 431
F+++ +V G F+G ++T + +R MVKK + +++ I V L+V
Sbjct: 65 NVRASFKIM--NVAGDAAYTQFNGHEMTKEFVRAMVKKRASRVDSTITVTPLGSTRELQV 122
Query: 432 YCIGFT-NKDTLSQ 470
FT N LSQ
Sbjct: 123 TITAFTINHARLSQ 136
>UniRef50_A0RTS7 Cluster: Ribosomal protein S3AE; n=2;
Thermoprotei|Rep: Ribosomal protein S3AE - Cenarchaeum
symbiosum
Length = 203
Score = 47.2 bits (107), Expect = 2e-04
Identities = 34/135 (25%), Positives = 62/135 (45%)
Frame = +3
Query: 72 IVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDA 251
+ D + K W + AP F V V T + KGRV EV+L D+
Sbjct: 8 VKDKWRDKRWITIHAPDSFNS--VPAARVPITD-----DKHAKGRVIEVTLFDILKGDPQ 60
Query: 252 ERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 431
+ +++ + I + V + F + + + LR +V++ + + +DVKT+DGYV R+
Sbjct: 61 QNNYKIYFQI-DKVSEESATSIFKRYEYSKEYLRSLVRRGSSKVNYIVDVKTSDGYVFRL 119
Query: 432 YCIGFTNKDTLSQRK 476
+ T + + +K
Sbjct: 120 KVLALTYRHLNTSKK 134
>UniRef50_A4D1I1 Cluster: Similar to ribosomal protein S3a; 40S
ribosomal protein S3a; v-fos transformation effector
protein 1; n=2; Eutheria|Rep: Similar to ribosomal
protein S3a; 40S ribosomal protein S3a; v-fos
transformation effector protein 1 - Homo sapiens (Human)
Length = 119
Score = 41.1 bits (92), Expect = 0.013
Identities = 15/27 (55%), Positives = 21/27 (77%)
Frame = +3
Query: 72 IVDPFTRKDWYDVKAPSMFTKRQVGTT 152
++D F++KDWYDVKA +MF R +G T
Sbjct: 21 VIDQFSKKDWYDVKALAMFNIRNIGKT 47
>UniRef50_Q6KYU3 Cluster: 30S ribosomal protein S3Ae; n=2;
Thermoplasmatales|Rep: 30S ribosomal protein S3Ae -
Picrophilus torridus
Length = 209
Score = 40.3 bits (90), Expect = 0.022
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Frame = +3
Query: 78 DPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLK-GRVFEVSLADLQADSDAE 254
D + K WY + APS +R++ + A L GR EV ++D +
Sbjct: 11 DKWKEKTWYTIVAPSFLGEREIAL--------SPAADPSLMIGRKVEVPVSDFTGNFRKS 62
Query: 255 RSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVL 425
+ FR+ ++ G+ F G ++ D +R MV++ + I+ + KT DGY L
Sbjct: 63 STMVIFRV--KECTGKRCTTEFIGHKVSDDTIRRMVRRRKERIDIIMPSKTKDGYRL 117
>UniRef50_Q978Z2 Cluster: 30S ribosomal protein S3Ae; n=2;
Thermoplasma|Rep: 30S ribosomal protein S3Ae -
Thermoplasma volcanium
Length = 215
Score = 39.1 bits (87), Expect = 0.052
Identities = 31/133 (23%), Positives = 58/133 (43%)
Frame = +3
Query: 78 DPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAER 257
+ + K WY V+AP ++V L S + RV EV +++L +
Sbjct: 12 EKWKEKVWYTVEAPPYLGSKEVSVALGED-------SNSMVNRVVEVPISELTGNFKKSN 64
Query: 258 SFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVYC 437
FR+ + +G F G + D +R +V++ + I+ DVKT+D ++ V
Sbjct: 65 EKALFRIT--NCEGTKCKTIFIGHYIGDDYIRRLVRRRKERIDIIEDVKTSDNSIITVKI 122
Query: 438 IGFTNKDTLSQRK 476
+ T+ + +K
Sbjct: 123 VVVTDGKVTNTKK 135
>UniRef50_Q3LW71 Cluster: Ribosomal protein S3a; n=1; Bigelowiella
natans|Rep: Ribosomal protein S3a - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 215
Score = 38.7 bits (86), Expect = 0.069
Identities = 31/129 (24%), Positives = 58/129 (44%)
Frame = +3
Query: 93 KDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAERSFRKF 272
K+W V AP +F + +G + N+ + + R EVSL++L +D ++
Sbjct: 25 KEWKIVIAPKIFEYKIIGYIINNKYTNNSGRLKEISKRNLEVSLSELI--NDYSSYYKII 82
Query: 273 RLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVYCIGFTN 452
+L + + F+G L+ D + MV K L+E +I + T V+ ++ +
Sbjct: 83 KLQPYTMNKMFIRTTFNGFRLSYDFIFSMVLKPTKLVEFSIKINTLKKKVVEIFVLYTIT 142
Query: 453 KDTLSQRKT 479
K+ S T
Sbjct: 143 KNLHSNSIT 151
>UniRef50_Q81B91 Cluster: Putative uncharacterized protein; n=4;
Bacillus cereus group|Rep: Putative uncharacterized
protein - Bacillus cereus (strain ATCC 14579 / DSM 31)
Length = 151
Score = 33.1 bits (72), Expect = 3.4
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Frame = +3
Query: 240 DSDAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTD-KLRWMVKKWQ-------TLIEANI 395
D ER F+ ++I+ED++ +LC + D+ T+ KL + K + LI N
Sbjct: 71 DVSPERMFQVLQIISEDIERIEMLCKEYEKDMPTEMKLIYDTKSGKFKAEYEYDLIHTND 130
Query: 396 DVKTTDGY 419
D+KT D +
Sbjct: 131 DIKTADDF 138
>UniRef50_A7ANW6 Cluster: Putative uncharacterized protein; n=1;
Babesia bovis|Rep: Putative uncharacterized protein -
Babesia bovis
Length = 1902
Score = 32.3 bits (70), Expect = 6.0
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Frame = -2
Query: 311 ENITSLDILSDKSELAERPFRITISLEISKGDLKNTPL*TLRCNFCSLGAIDKGGAHLSL 132
E++ S +I+ D + + RIT+ ++I + T L TLR N ++ ++ +H L
Sbjct: 100 ESLYSPEIVDDLNHIVTSQNRITLLIKIRAINTLTTVLQTLRQNVPTVWEVNSLESHQYL 159
Query: 131 GEHGRRFNIVPVFTGERINNLLLNTLLASF--RKAFI 27
E RF + V NNL +++ S+ RKAFI
Sbjct: 160 CER-FRFISIDVLLQVFNNNLEAPSVVTSYQRRKAFI 195
>UniRef50_A3PDQ5 Cluster: Putative uncharacterized protein; n=1;
Prochlorococcus marinus str. MIT 9301|Rep: Putative
uncharacterized protein - Prochlorococcus marinus
(strain MIT 9301)
Length = 133
Score = 31.9 bits (69), Expect = 7.9
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = -2
Query: 302 TSLDILSDKSELAERPFRITISLEISKGDLKNTPL*TLRCNFC 174
T+L I+ +K+ + + F + I ISK D++N + TL C C
Sbjct: 54 TTLGIILEKNNIESKSFYVDI---ISKSDVQNNKISTLHCKIC 93
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 495,419,388
Number of Sequences: 1657284
Number of extensions: 10117131
Number of successful extensions: 26310
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 25534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26279
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 28019067077
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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