Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_F07
(489 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 208 2e-54
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 206 1e-53
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 206 1e-53
11_01_0807 - 7178278-7178548,7178629-7178756,7178847-7179815,718... 29 2.6
12_01_0014 + 105422-105520,105598-105725,105939-106101,106198-10... 27 6.1
11_01_0014 + 108647-108816,109704-109803,109891-110018,110232-11... 27 6.1
10_06_0143 - 11183574-11183761,11183989-11184344,11184437-111845... 27 6.1
09_04_0708 + 19648511-19648808,19649189-19649280,19650850-196510... 27 6.1
10_06_0125 + 11020726-11020785,11021872-11022198,11022589-11023041 27 8.1
05_07_0283 - 28937027-28937110,28937211-28937549,28937641-289377... 27 8.1
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 208 bits (507), Expect = 2e-54
Identities = 97/138 (70%), Positives = 115/138 (83%)
Frame = +3
Query: 75 VDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAE 254
VDPF +KDWYD+KAPS+F R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 255 RSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVY 434
+++RK RL AEDVQG+NVL NF GM TTDKLR +VKKWQTLIEA++DVKTTDGY+LR++
Sbjct: 79 QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLF 138
Query: 435 CIGFTNKDTLSQRKTCYA 488
CIGFT + ++TCYA
Sbjct: 139 CIGFTKRRPNQVKRTCYA 156
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 206 bits (502), Expect = 1e-53
Identities = 97/138 (70%), Positives = 114/138 (82%)
Frame = +3
Query: 75 VDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAE 254
VDPF +KDWYD+KAPS+F R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 255 RSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVY 434
+++RK RL AEDVQG+NVL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+LR++
Sbjct: 79 QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLF 138
Query: 435 CIGFTNKDTLSQRKTCYA 488
CIGFT + ++TCYA
Sbjct: 139 CIGFTKRRPNQVKRTCYA 156
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 206 bits (502), Expect = 1e-53
Identities = 96/138 (69%), Positives = 116/138 (84%)
Frame = +3
Query: 75 VDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAE 254
VDPF++KDWYD+KAP++F+ R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFSKKDWYDIKAPTVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 255 RSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVY 434
+++RK RL AEDVQGRNVL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+LR++
Sbjct: 79 QAYRKVRLRAEDVQGRNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLF 138
Query: 435 CIGFTNKDTLSQRKTCYA 488
CIGFT + ++TCYA
Sbjct: 139 CIGFTKRRPNQVKRTCYA 156
>11_01_0807 -
7178278-7178548,7178629-7178756,7178847-7179815,
7180465-7180518,7180622-7180798,7180913-7181926,
7182038-7182101,7182247-7182563,7182797-7182847
Length = 1014
Score = 28.7 bits (61), Expect = 2.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 100 GTMLKRRPCSPRDKWAPPLSIAP 168
G + R PC PRDK+ P S+ P
Sbjct: 206 GAYIVRLPCGPRDKYLPKESLWP 228
>12_01_0014 +
105422-105520,105598-105725,105939-106101,106198-106310,
106787-106825,107026-107109,107193-107241,107331-107422,
107680-107809,107906-107982,108058-109676,110024-110221,
110287-110825
Length = 1109
Score = 27.5 bits (58), Expect = 6.1
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 280 SLRMSRDVMFSAISTAWTSPLINSDG 357
SL S D+ FS I +AW + SDG
Sbjct: 409 SLESSLDIDFSTIPSAWNDDDVTSDG 434
>11_01_0014 +
108647-108816,109704-109803,109891-110018,110232-110394,
110491-110603,111080-111118,111319-111402,111486-111534,
111624-111715,111999-112128,112225-112301,112377-113995,
114348-114545,114635-115173
Length = 1166
Score = 27.5 bits (58), Expect = 6.1
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 280 SLRMSRDVMFSAISTAWTSPLINSDG 357
SL S D+ FS I +AW + SDG
Sbjct: 466 SLESSLDIDFSTIPSAWNDDDVTSDG 491
>10_06_0143 -
11183574-11183761,11183989-11184344,11184437-11184592,
11184825-11184994,11185906-11186064,11186856-11187164,
11187281-11187576,11187825-11188174,11188279-11188434,
11188634-11188803,11189289-11189447,11190702-11191010,
11191172-11191458,11191911-11192263,11192366-11192521,
11192680-11192849,11195800-11195958,11196937-11197254,
11197658-11197786
Length = 1449
Score = 27.5 bits (58), Expect = 6.1
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 285 EDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEAN 392
E +QG LCN +GM T+ LR + W T I N
Sbjct: 180 EKLQGEYQLCNGYGMKKATEVLR---EHWSTYILEN 212
>09_04_0708 +
19648511-19648808,19649189-19649280,19650850-19651000,
19651779-19651906,19652099-19652257,19652325-19652507,
19652978-19653178,19653269-19653289
Length = 410
Score = 27.5 bits (58), Expect = 6.1
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Frame = +3
Query: 207 VFEVSLADLQADS----DAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQ 374
+ ++++ADL S D +R+ ++ ++ E + N L DKL +V Q
Sbjct: 144 LMKIAIADLNNSSISLEDRQRALQELLILVEPIDNANDL----------DKLGGLVAVIQ 193
Query: 375 TLIEANIDVKTTDGYVL 425
L AN +++TT +VL
Sbjct: 194 DLNNANEEIRTTSAWVL 210
>10_06_0125 + 11020726-11020785,11021872-11022198,11022589-11023041
Length = 279
Score = 27.1 bits (57), Expect = 8.1
Identities = 28/105 (26%), Positives = 43/105 (40%)
Frame = -2
Query: 344 ISGEVHAVEIAENITSLDILSDKSELAERPFRITISLEISKGDLKNTPL*TLRCNFCSLG 165
++ VHAV + + E AE +I ++E +G LK + F G
Sbjct: 140 MADNVHAVHFVAPWAPMFKGKTEEEKAEGIKQILAAVETLEGALKGC---SKEKPFFGGG 196
Query: 164 AIDKGGAHLSLGEHGRRFNIVPVFTGERINNLLLNTLLASFRKAF 30
+ G + LG H V TG +I N + LLAS+ + F
Sbjct: 197 TV--GLVDIMLGAHIPGVRATEVLTGAKIFNAAITPLLASWTERF 239
>05_07_0283 -
28937027-28937110,28937211-28937549,28937641-28937754,
28937843-28937955,28939050-28939087,28939315-28939478,
28939746-28939794,28940986-28941152
Length = 355
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 147 TTLVNRTQGTKIASEGLKGRVFEV 218
TT+VN + K+A EG+KG ++V
Sbjct: 17 TTIVNLAEEAKLAREGVKGPGYQV 40
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,723,574
Number of Sequences: 37544
Number of extensions: 290945
Number of successful extensions: 694
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -