Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_F07
         (489 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)          55   3e-08
SB_8542| Best HMM Match : PT (HMM E-Value=4)                           30   1.2  
SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91)               28   4.7  
SB_23740| Best HMM Match : PAN (HMM E-Value=0.0056)                    28   4.7  
SB_50701| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_48859| Best HMM Match : TBC (HMM E-Value=7.1e-12)                   27   6.3  
SB_14239| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_9937| Best HMM Match : Fer2 (HMM E-Value=6.9)                       27   6.3  
SB_25842| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  
SB_3911| Best HMM Match : Pepsin-I3 (HMM E-Value=3.7)                  27   8.3  

>SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)
          Length = 147

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 24/38 (63%), Positives = 30/38 (78%)
 Frame = +3

Query: 375 TLIEANIDVKTTDGYVLRVYCIGFTNKDTLSQRKTCYA 488
           TLIEA +DVKTTDGY+LR++CIGFT +     +KT YA
Sbjct: 2   TLIEAAVDVKTTDGYLLRMFCIGFTKRRQNQIKKTAYA 39


>SB_8542| Best HMM Match : PT (HMM E-Value=4)
          Length = 650

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -1

Query: 321 GNCREHYVP-GHPQR*V*TCGKTFPHHYQPGDQQGRPQKHAPLDPQMQF 178
           GN +  Y P G+PQ      G   P +Y PG+ Q  P+ + P +PQ ++
Sbjct: 370 GNPQSRYYPSGNPQPRYYPSGNPQPRYYLPGNPQ--PRYYLPGNPQPRY 416



 Score = 29.1 bits (62), Expect = 2.1
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -1

Query: 321 GNCREHYVP-GHPQR*V*TCGKTFPHHYQPGDQQGRPQKHAPLDPQMQFLFPG 166
           GN +  Y P G+PQ     CG   P +Y  G+ Q  P+ +   +PQ  FL  G
Sbjct: 189 GNPQPKYYPSGNPQSRYYPCGNPQPKYYPSGNPQ--PRYYPSGNPQPWFLPSG 239


>SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91)
          Length = 1249

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -2

Query: 359 HPSEFISGEVHAVEIAENITSLDILSDKSELAERP 255
           +PSE I    HAVE AE +  L  LS+ S  ++ P
Sbjct: 15  NPSEGIKITTHAVEQAEQLERLHRLSESSAASQVP 49


>SB_23740| Best HMM Match : PAN (HMM E-Value=0.0056)
          Length = 265

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +1

Query: 211 LRSPLLISRLIVMRKGLSASSDLSLRMSRDVMF 309
           LR P+L++ LI + +GL+  SD S  + RD  F
Sbjct: 3   LRYPVLLAVLISLARGLALESDNSNTIQRDDYF 35


>SB_50701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 311

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 72  IVDPFTRKDWYDVKAPSMFTKRQ 140
           +V+P+  KDW D    SMF+ RQ
Sbjct: 98  LVEPWRWKDWEDFTQSSMFSGRQ 120


>SB_48859| Best HMM Match : TBC (HMM E-Value=7.1e-12)
          Length = 660

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -2

Query: 377 CLPFLYHPSEFISGEVHAVEIAENITSLDILSDKSE 270
           C+P L   S+ + GE+ AV    ++ S D+L DK++
Sbjct: 30  CVPLLREDSDAVDGELSAV---SDVESSDLLYDKAD 62


>SB_14239| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 706

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 158 DKGGAHLSLGEHGRRFNIVPVFTGER 81
           D+      +G HG  F IVP++T E+
Sbjct: 89  DRTFQRADVGPHGEAFKIVPIYTDEK 114


>SB_9937| Best HMM Match : Fer2 (HMM E-Value=6.9)
          Length = 229

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 333 LTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVYC 437
           L T +   +  +WQT +  N+ VK TDG +    C
Sbjct: 142 LPTCQTTMLFSEWQTKLVCNLTVKKTDGKMQMYTC 176


>SB_25842| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 148

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -2

Query: 365 LYHPSEFISGEVHAVEIAENITSLDILSDKSELAER 258
           L  P++ +S ++H  E+  +  S  +LSD SE +ER
Sbjct: 27  LIQPAKIVS-DIHETELCPSNDSKFVLSDSSEQSER 61


>SB_3911| Best HMM Match : Pepsin-I3 (HMM E-Value=3.7)
          Length = 393

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 288 PQR*V*TCGKTFPHHYQPGDQQGRPQKHAP 199
           P R     GK  P+HYQ  D Q   ++H P
Sbjct: 333 PHRSATEIGKLRPYHYQQQDMQLPTERHLP 362


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,793,214
Number of Sequences: 59808
Number of extensions: 340714
Number of successful extensions: 756
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)