Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_F06
         (512 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   250   7e-68
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   141   5e-35
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   138   3e-34
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...   131   5e-32
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    31   0.13 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   0.94 
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   1.2  
SPBC19G7.16 |iws1||transcription elongation factor complex subun...    27   1.6  
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    27   1.6  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    26   2.9  
SPAC1805.16c |||purine nucleoside phosphorylase |Schizosaccharom...    26   2.9  
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz...    26   3.8  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    25   5.0  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    25   8.8  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    25   8.8  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    25   8.8  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  250 bits (613), Expect = 7e-68
 Identities = 108/142 (76%), Positives = 125/142 (88%)
 Frame = +3

Query: 87  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 266
           MREIVHIQAGQCGNQ+GA FW  I+DEHG+D  G YHG S+ Q ER+NVY+NEA+GGKYV
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60

Query: 267 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLHVV 446
           PRA+LVDLEPGTMD+V+SG FG +FRPDN ++GQSGAGN WAKGHYTEGAEL D+VL VV
Sbjct: 61  PRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVV 120

Query: 447 RKEAESCDCIQRFQLTHSLGGG 512
           R+EAE+CD +Q FQLTHSLGGG
Sbjct: 121 RREAEACDALQGFQLTHSLGGG 142


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  141 bits (342), Expect = 5e-35
 Identities = 65/144 (45%), Positives = 90/144 (62%), Gaps = 2/144 (1%)
 Frame = +3

Query: 87  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLER--INVYYNEASGGK 260
           MREI+ I  GQ G QIG   WE+   EHGI P G  + ++  Q      + +++E   GK
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60

Query: 261 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLH 440
           YVPR+I VDLEP  +D VR+GP+  +F P+  + G+  A NN+A+GHYT G ELVD V  
Sbjct: 61  YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTD 120

Query: 441 VVRKEAESCDCIQRFQLTHSLGGG 512
            +R+ A++C  +Q F + HS GGG
Sbjct: 121 KIRRIADNCSGLQGFLVFHSFGGG 144


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score =  138 bits (335), Expect = 3e-34
 Identities = 63/148 (42%), Positives = 91/148 (61%), Gaps = 6/148 (4%)
 Frame = +3

Query: 87  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTG------AYHGDSDLQLERINVYYNEA 248
           MRE++ +  GQ G QIG   WE+   EHGI P G        H ++    +    +++E 
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60

Query: 249 SGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 428
             GK+VPR+I VDLEP  +D VR+GP+  +F P+  V G+  A NN+A+GHYT G E++D
Sbjct: 61  GQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMID 120

Query: 429 SVLHVVRKEAESCDCIQRFQLTHSLGGG 512
           SVL  +R+ A++C  +Q F + HS GGG
Sbjct: 121 SVLERIRRMADNCSGLQGFLVFHSFGGG 148


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score =  131 bits (317), Expect = 5e-32
 Identities = 55/143 (38%), Positives = 95/143 (66%), Gaps = 2/143 (1%)
 Frame = +3

Query: 90  REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 269
           REI+ +QAGQCGNQIG++FW+ +  EHGI P G     +   ++R +V++ ++   +Y+P
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62

Query: 270 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELVDSVLHV 443
           RAIL+DLEP  ++++ S  +G ++ P+N +  ++  GAGNNWA G Y+    + + ++ +
Sbjct: 63  RAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDM 121

Query: 444 VRKEAESCDCIQRFQLTHSLGGG 512
           + +EA+  D ++ F L HS+ GG
Sbjct: 122 IDREADGSDSLEGFSLLHSIAGG 144


>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 30.7 bits (66), Expect = 0.13
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = -1

Query: 173 AVLIGDDLPELSSNLVSALSGLDVHDFPHFDISELNKLLNTNIFCSARTTHFP 15
           +++I D+L   S    + LSG ++  + H D+++L ++L   I      TH P
Sbjct: 273 SLIISDELNHTSIRFGARLSGANIRVYKHNDMTDLERVLREVISQGQPRTHRP 325


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.9 bits (59), Expect = 0.94
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +1

Query: 97  SCTSRPDNAETRLELSSGRSSPMSTASTPPVLTTATQTCSWSASMFITM 243
           S +SR  +  +   LSS  S P+ TAS+  +LT+++ T   S    +T+
Sbjct: 427 STSSRSSSHSSSHSLSSLSSKPILTASSSSLLTSSSHTYERSTVYVVTV 475


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 32/125 (25%), Positives = 47/125 (37%), Gaps = 3/125 (2%)
 Frame = +1

Query: 55  LSNLFSSDISK*GKSCTSRPDNAETRLELSSG-RSSPMSTASTPPVLTTATQTCSWSASM 231
           LS   SS  S    + TS P +  + +  SS   SSP  T ST  ++ +++   S S+S+
Sbjct: 592 LSISSSSTSSTFSSASTSSPSSISSSISSSSTILSSP--TPSTSSLMISSSSIISGSSSI 649

Query: 232 FITMRXXXXXXXXXXXXXXXXXXXXXXXXRDPSDR--SSAPTTSFSDSPAPVTTGLRDTT 405
             +                             S    SS+P  S S SP P ++ L  T 
Sbjct: 650 LSSSISTIPISSSLSTYSSSVIPSSSTLVSSSSSLIVSSSPVASSSSSPIPSSSSLVSTY 709

Query: 406 RKVLS 420
              LS
Sbjct: 710 SASLS 714



 Score = 27.1 bits (57), Expect = 1.6
 Identities = 23/97 (23%), Positives = 38/97 (39%)
 Frame = +1

Query: 97  SCTSRPDNAETRLELSSGRSSPMSTASTPPVLTTATQTCSWSASMFITMRXXXXXXXXXX 276
           S  S P ++  + + S+  SS  S +S    L+T+++  S  +S   T+           
Sbjct: 466 SSVSVPSSSSVQPQSSTPISSSSSASSPQSTLSTSSEVVSEVSS---TLLSGSSAIPSTS 522

Query: 277 XXXXXXXXXXXXXXRDPSDRSSAPTTSFSDSPAPVTT 387
                            S  SS PT+S SD  + +TT
Sbjct: 523 SSTPSSSIISSPMTSVLSSSSSIPTSSSSDFSSSITT 559


>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = +3

Query: 126 NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERI 227
           N++G    E+++++  +DPT A   + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 321 GPFGQIFRPDNFVFGQSGAG-NNWAKGHYTEGAELVDSVLH 440
           GP+G +F P  F+F  +G    NW+   Y E A L  +  H
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHLDSNWRH 196


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = -1

Query: 182 GVDAVLIGDDLPELSSNLVSALSGLDVHDFPHFDISELNKLLNTNIFCSARTT 24
           G+D  +IG+D  E  S L S L+ LD    P++ I   N   NT  + +A  T
Sbjct: 176 GIDIRIIGNDAGEKLSILSSTLARLD-RPAPNYGIDNYND-FNTFYYQAASGT 226


>SPAC1805.16c |||purine nucleoside phosphorylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 315

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 173 AVLIGDDLPELSSNLVSALSGLDVHDFPHFDISEL 69
           A++ G  L  L+S L + +  +   D PHF +S +
Sbjct: 44  AIICGSGLGTLASGLSAPVYEVPYEDIPHFHVSHV 78


>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 255

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 379 PAPDCPKTKLSGRKICPKGPERTESMVPGSRS 284
           P+   PK  L  R I P GPE  +  + GS S
Sbjct: 20  PSTPPPKEVLHTRVIVPNGPEEIKLRLVGSHS 51


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +3

Query: 342  RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLHVVRKEAESCDC 473
            RP   +F     G++   G   +  E  D ++ +  +  ESCDC
Sbjct: 955  RPSRLIF-YDNCGDSSGAGLCNKAYEHTDELITMAIERIESCDC 997


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1323

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 18/78 (23%), Positives = 28/78 (35%)
 Frame = -1

Query: 290  EVDEDGAGHVLASGGLIVINIDXXXXXXXXXXVSTGGVDAVLIGDDLPELSSNLVSALSG 111
            +VDE  +G ++       IN++           S  G   + +        SN  S L  
Sbjct: 911  DVDESNSGSIVFPKSKTSINLNNINSASASIMGSRFGAADIFMSKRPSTKGSNRPSILLS 970

Query: 110  LDVHDFPHFDISELNKLL 57
               HDF    I  ++K L
Sbjct: 971  KPSHDFHVVRIISMSKYL 988


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -1

Query: 188 TGGVDAVLIGDDLPE-LSSNLVSALSGLDVHDFPH 87
           +G  + + +  DL E L   L+SA  GL+ H F H
Sbjct: 31  SGKPEFINLSPDLEENLDEKLMSAFPGLEPHVFQH 65


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 319 RDPSDRSSAPTTSFSDSPAPVTTGLRDT 402
           +DPSD  S+PT   S +P+  T  L+ T
Sbjct: 19  QDPSDAQSSPTFVPSANPSLTTPWLQTT 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,996,494
Number of Sequences: 5004
Number of extensions: 37780
Number of successful extensions: 148
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)