Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_F05
(589 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos... 175 4e-45
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S... 171 6e-44
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc... 28 1.2
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi... 27 2.7
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe... 26 3.5
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni... 26 4.7
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch... 25 6.2
SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|ch... 25 6.2
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni... 25 8.2
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 25 8.2
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac... 25 8.2
>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 1|||Manual
Length = 187
Score = 175 bits (426), Expect = 4e-45
Identities = 94/185 (50%), Positives = 123/185 (66%), Gaps = 4/185 (2%)
Frame = +2
Query: 47 MGIDINHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRPP 226
MGIDI H RK +R++ S++V T+++FN+ IL+RLF S+ NRPP
Sbjct: 1 MGIDIERHHVRKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPP 60
Query: 227 ISLSRLAR--HMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGG 400
IS+S++A K + EG V+VGTV++D RL TVPK++VAAL T+ ARARIL AGG
Sbjct: 61 ISISKIAALTSRKSASLEGKTTVIVGTVTDDERLLTVPKLSVAALRFTKSARARILKAGG 120
Query: 401 EILTFDQLALRAPTGRKTVLVQGRRNAREAVRHFGPAPGAPRSHTKPYVRTNGH--EHAR 574
E+LT DQLALRAPTG TVL++G+++AREA RHFG P H PYVR+ G E AR
Sbjct: 121 EVLTLDQLALRAPTGSNTVLLRGKKHAREAYRHFG---FGPHKHKAPYVRSEGRKFERAR 177
Query: 575 PSRRS 589
R+S
Sbjct: 178 GRRKS 182
>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 171 bits (416), Expect = 6e-44
Identities = 91/185 (49%), Positives = 122/185 (65%), Gaps = 4/185 (2%)
Frame = +2
Query: 47 MGIDINHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRPP 226
MGIDI H +K +R++ S++V T+++FN+ IL+RLF S+ NRPP
Sbjct: 1 MGIDIERHHVKKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPP 60
Query: 227 ISLSRLAR--HMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGG 400
IS+S++A K + + VVVGTV++D R+ TVPK+++AAL T+ ARARIL AGG
Sbjct: 61 ISISKIAALTSRKSASSQNKTTVVVGTVTDDERMLTVPKLSIAALRFTKSARARILKAGG 120
Query: 401 EILTFDQLALRAPTGRKTVLVQGRRNAREAVRHFGPAPGAPRSHTKPYVRTNGH--EHAR 574
E+LT DQLALRAPTG TVLV+G+++AREA RHFG P H PYVR+ G E AR
Sbjct: 121 EVLTLDQLALRAPTGSNTVLVRGKKHAREAYRHFG---FGPHKHKAPYVRSEGRKFERAR 177
Query: 575 PSRRS 589
R+S
Sbjct: 178 GRRKS 182
>SPBC19G7.06 |mbx1||MADS-box transcription factor
Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 217 PTSDFFVPFGTPHEEAYTRGFDRCSR 294
P +D F+PF TP +AY + R R
Sbjct: 209 PQTDNFIPFLTPKRQAYGQSSSRADR 234
>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 26.6 bits (56), Expect = 2.7
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = +2
Query: 278 LIAVVVGTVSNDVRLY-TVPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGRKT 454
L+ +VV ++NDVRL+ V + + H E A L A +++ + T KT
Sbjct: 694 LLKMVVPLITNDVRLWRIVARYYLWRRHFAESLNA-TLKAYRILISSPNVTSDEATWNKT 752
Query: 455 VLVQGRRNAREAVRHFGPAPG 517
V+G EA + G PG
Sbjct: 753 --VEGALELVEAYANLGEMPG 771
>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 523
Score = 26.2 bits (55), Expect = 3.5
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +3
Query: 441 LDVRQYWFRVAVMLVRQFVTSGRRLVHLVHILNHTCAPMDTS 566
L+ R+ +++ + + + G R + LV +N C P+DT+
Sbjct: 161 LEYRRAFYKALRERIERLIKEGNRKIILVGDVNILCNPIDTA 202
>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1227
Score = 25.8 bits (54), Expect = 4.7
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +2
Query: 443 GRKTVLVQGRRNAREAVRHFGPAPGA-PR 526
G L Q RR V HFG APG+ PR
Sbjct: 844 GESFDLSQKRRRGEPVVHHFGFAPGSTPR 872
>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 3|||Manual
Length = 136
Score = 25.4 bits (53), Expect = 6.2
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = +2
Query: 416 DQLALRAPTGRKTVLVQGRRNAREAVRHFGPAPGAPRSHTKPYVRTNGHEHARPSR 583
DQ + P G V+ R + + G A RS KP+++ + H P+R
Sbjct: 30 DQGSKSHPFGH-AVVAGVERYPLKVTKSMGAKRIAKRSRVKPFIKVINYNHLMPTR 84
>SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 548
Score = 25.4 bits (53), Expect = 6.2
Identities = 15/60 (25%), Positives = 30/60 (50%)
Frame = +2
Query: 221 PPISLSRLARHMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGG 400
PP+ S L + T + L ++ + + R+ T+PK+ + L + +R +L +GG
Sbjct: 206 PPVDESFLMGSISSDTVDTLHTYLIKALQD--RVLTIPKLCSSNLDCSHYSRVCVLYSGG 263
>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 25.0 bits (52), Expect = 8.2
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +2
Query: 416 DQLALRAPTGRKTVLVQGRRNAREAVRHFGPA 511
D++ + P G K + Q ++ R A++H+ A
Sbjct: 120 DEILPKEPAGSKEAMQQKKKEKRAALKHYREA 151
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 25.0 bits (52), Expect = 8.2
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -1
Query: 103 LNFGAPNFPVVFMIDVDTHLD 41
LN+ + + PV+ I +D+HLD
Sbjct: 1170 LNWDSVDVPVIIKISLDSHLD 1190
>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 25.0 bits (52), Expect = 8.2
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = +2
Query: 416 DQLALRAPTGRKTVLVQGRRNAREAVRHFGPAPGAPRSHTKPYVRTNGHEHARPSR 583
DQ + P G V+ R + + G A RS KP+++ + H P+R
Sbjct: 30 DQGSKSHPFGH-AVVAGVERYPLKVTKSMGAKRIARRSRVKPFIKVVNYNHLMPTR 84
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,435,088
Number of Sequences: 5004
Number of extensions: 46917
Number of successful extensions: 119
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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