Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_F05
         (589 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844...   190   7e-49
05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317...   189   1e-48
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892...   175   3e-44
06_03_1313 - 29252335-29252446,29253430-29253671,29253770-292538...    30   1.2  
08_01_0892 - 8778097-8778236,8778390-8778486,8778568-8778747,877...    27   8.4  

>07_03_1667 +
           28484069-28484071,28484151-28484240,28484339-28484491,
           28484575-28484757,28486137-28486295
          Length = 195

 Score =  190 bits (463), Expect = 7e-49
 Identities = 103/190 (54%), Positives = 128/190 (67%), Gaps = 9/190 (4%)
 Frame = +2

Query: 47  MGID-INHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRP 223
           MGID +    ++K +RT  +S+DV               T + FN +IL+RLFMS+ NRP
Sbjct: 1   MGIDLVAGGRNKKTKRTAPRSEDVYLKLIVKLYRFLVRRTKSHFNAVILKRLFMSKTNRP 60

Query: 224 PISLSRLARHM--KKPTREGL----IAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARI 385
           P+S+ RL R M  K P R  +    IAV+VGTV++D R+Y VP M VAAL  TE ARARI
Sbjct: 61  PLSMRRLVRFMEGKVPDRHAISGDQIAVIVGTVTDDKRIYEVPAMKVAALRFTETARARI 120

Query: 386 LAAGGEILTFDQLALRAPTGRKTVLVQGRRNAREAVRHFGPAPGAPRSHTKPYVRTNGH- 562
           + AGGE LTFDQLALRAP G+ TVL++G +NAREAV+HFGPAPG P S+TKPYVR+ G  
Sbjct: 121 INAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSNTKPYVRSKGRK 180

Query: 563 -EHARPSRRS 589
            E AR  R S
Sbjct: 181 FEKARGRRNS 190


>05_01_0401 +
           3169979-3169981,3170071-3170160,3170556-3170684,
           3170814-3170999,3172001-3172159
          Length = 188

 Score =  189 bits (461), Expect = 1e-48
 Identities = 101/184 (54%), Positives = 123/184 (66%), Gaps = 3/184 (1%)
 Frame = +2

Query: 47  MGID-INHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRP 223
           MGID +    ++K +RT  +S DV               T + FN +IL+RLFMS+ NRP
Sbjct: 1   MGIDLVAGGRNKKTKRTAPRSDDVYLKLLVKLYRFLVRRTKSNFNAVILKRLFMSKTNRP 60

Query: 224 PISLSRLARHMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGE 403
           P+SL RLA+ M+    E  IAV+VGTV++D R+  +PKM V AL  TE ARARI+ AGGE
Sbjct: 61  PLSLRRLAKFMEGK-EENNIAVIVGTVTDDKRIQEIPKMKVTALRFTETARARIVNAGGE 119

Query: 404 ILTFDQLALRAPTGRKTVLVQGRRNAREAVRHFGPAPGAPRSHTKPYVRTNGH--EHARP 577
            LTFDQLALRAP G  TVL++G +NAREAVRHFG APG P SHTKPYVR+ G   E AR 
Sbjct: 120 CLTFDQLALRAPLGENTVLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARG 179

Query: 578 SRRS 589
            R S
Sbjct: 180 RRNS 183


>03_02_0954 -
           12687373-12687582,12688885-12689067,12689160-12689288,
           12689375-12689464,12689548-12689550
          Length = 204

 Score =  175 bits (425), Expect = 3e-44
 Identities = 103/201 (51%), Positives = 125/201 (62%), Gaps = 20/201 (9%)
 Frame = +2

Query: 47  MGID-INHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRP 223
           MGID +    ++K +RT  KS DV               T + FN +ILRRLFMS+ NRP
Sbjct: 1   MGIDLVAGGRNKKTKRTAPKSDDVYLKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTNRP 60

Query: 224 PISLSRLARHMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGE 403
           P+SL RL R M+   +E  IAV+VGTV++D R+Y VP M VAAL  TE ARARI+  GGE
Sbjct: 61  PLSLRRLVRFMEG--KENQIAVIVGTVTDDKRVYEVPAMKVAALRFTETARARIVNTGGE 118

Query: 404 ILTFDQLALRAPTGRKT-----------------VLVQGRRNAREAVRHFGPAPGAPRSH 532
            LTFDQLALRAP G+ T                 VL++G +NAREAV+HFGPAPG P S+
Sbjct: 119 CLTFDQLALRAPLGQNTYIAMPEILTIDNFALLQVLLRGPKNAREAVKHFGPAPGVPHSN 178

Query: 533 TKPYVRTNGH--EHARPSRRS 589
           TKPYVR+ G   E AR  R S
Sbjct: 179 TKPYVRSKGRKFEKARGRRNS 199


>06_03_1313 -
           29252335-29252446,29253430-29253671,29253770-29253848,
           29254991-29255130,29255262-29255571,29255810-29255952,
           29256106-29256306,29256453-29256581,29256921-29257199,
           29258036-29259720,29261255-29261764,29261901-29262108,
           29264347-29264458,29264594-29264763
          Length = 1439

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -1

Query: 352 CGYCHFRNS--VKPHIIGDCANDYSDQTLACRLLHVACQTGQRNRRSVDTAHKQSP 191
           C Y H R S  V  H   +C N++      C   HV C+  +  RRS + AHKQ+P
Sbjct: 658 CSYRHCRESKMVSDHY-KNCINEH------C---HVCCKAKEMLRRSSELAHKQNP 703


>08_01_0892 -
           8778097-8778236,8778390-8778486,8778568-8778747,
           8779138-8779247,8781153-8781294,8782298-8782686,
           8782752-8782834,8783524-8785244,8785894-8786040,
           8786121-8786264,8786669-8786741,8787413-8787633
          Length = 1148

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 495 VTSGRRLVHLVHILNHTCAPMDTS 566
           + S   LVH VH+ +  C P++T+
Sbjct: 815 IASETMLVHFVHVFSFVCVPVNTT 838


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,964,292
Number of Sequences: 37544
Number of extensions: 352703
Number of successful extensions: 997
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)