Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_F05
         (589 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   1.3  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    23   2.9  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    23   2.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   6.8  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   9.0  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   9.0  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 402 SPPAAKMRARAFSVTCSAATV 340
           SPP  + R+ + S TCS  TV
Sbjct: 277 SPPVKQHRSSSASTTCSGHTV 297


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
 Frame = -3

Query: 329 QCKA--SHHWRLCQRLQRSNPRV*ASSCGVPNGTK 231
           QC+A   H   LC    R N +    SC  P+G K
Sbjct: 35  QCQAVNGHCSHLCLPAPRINSKSPLLSCACPDGLK 69


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
 Frame = -3

Query: 329 QCKA--SHHWRLCQRLQRSNPRV*ASSCGVPNGTK 231
           QC+A   H   LC    R N +    SC  P+G K
Sbjct: 35  QCQAVNGHCSHLCLPAPRINSKSPLLSCACPDGLK 69


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 33  FRLSRWVSTSIINTT 77
           +  +RW +TS+I TT
Sbjct: 776 YSTTRWPATSVITTT 790


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 6   RIFVYSLFLFRLSRWVSTSII 68
           RI  +     R+  WV+TS+I
Sbjct: 261 RILYFHSLASRVESWVNTSVI 281


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +1

Query: 214 QPTSDFFVPFGTPHEEAY 267
           +  +D+F+P G P  + Y
Sbjct: 416 EENTDYFMPIGRPRAKDY 433


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,126
Number of Sequences: 438
Number of extensions: 3055
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)