Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_F04
         (525 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    23   2.2  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    22   3.8  
AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone recepto...    21   5.0  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    21   6.7  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   8.8  

>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 277 NYRNGTTELK*EYFYTGVCIPFP 345
           N+    +E+  EYFY+ +  P+P
Sbjct: 236 NFSKQASEILNEYFYSHLSNPYP 258


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2

Query: 119 ILKNHENIHIVIASILGE 172
           I+K H+N+H  I +++ E
Sbjct: 208 IVKEHQNLHNKICNLIDE 225



 Score = 21.4 bits (43), Expect = 5.0
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +3

Query: 276 KLPEWYDRAKIGIFLHWGVYSVPSYGSEW 362
           ++P WY    IG+ +  G   + S  ++W
Sbjct: 36  EVPRWYICYTIGVIITIGCLCIWSIFNKW 64


>AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone receptor
           (isoform B) protein.
          Length = 96

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 355 QNGFGVIGKVVL*STHCL 408
           QNG+G+ G  ++ S H L
Sbjct: 62  QNGYGLPGHTIIASNHHL 79


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 393 KYTLFMDKNYPPGFSYQEFA 452
           KYT +    YP  F++ EF+
Sbjct: 345 KYTTYFLNTYPHLFNFFEFS 364


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 357 LTHNWERNTHPSVKIF 310
           LTHN   N +PS  I+
Sbjct: 338 LTHNIAHNPYPSHSIY 353


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,396
Number of Sequences: 336
Number of extensions: 2948
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12678017
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)