Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_F04
(525 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC887.18c |||transcription adaptor protein |Schizosaccharomyce... 29 0.56
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 28 0.74
SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch... 28 0.98
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 27 1.7
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 27 2.3
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 27 2.3
SPBC16E9.17c |rem1||meiosis-specific cyclin Rem1|Schizosaccharom... 26 3.0
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 26 4.0
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase... 26 4.0
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 25 5.2
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 25 5.2
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|... 25 5.2
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p... 25 5.2
SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces po... 25 6.9
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac... 25 9.1
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc... 25 9.1
SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce... 25 9.1
>SPBC887.18c |||transcription adaptor protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 339
Score = 28.7 bits (61), Expect = 0.56
Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +3
Query: 165 LVNAKKYNFDNLENSISEHDEVNSKKFNPDWKDLDTRKLPEWYDRAKI--GIFLH 323
L A K NFD L NSI H +K N + L LP W+ R K+ +FLH
Sbjct: 64 LTFAGKSNFDKLHNSIIFHILKLMQKNNDTFSAL--HHLP-WFKRKKVDNSLFLH 115
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 28.3 bits (60), Expect = 0.74
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3
Query: 273 RKLPEWYDRAKIGIFLHWGVYSVPSYG-SEWFW 368
R L +++ + IG++L W YS P G + W W
Sbjct: 2275 RWLQQFWATSNIGLYLPWAGYSGPYLGRTLWLW 2307
>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 27.9 bits (59), Expect = 0.98
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = -1
Query: 396 TSENHLSNYSKTILTHNWERNTHPSVKIFLF*LCRTIPVIFVCPNLSSPD*IF 238
+ HLS+ K+ + ER + PS+ + L TI +++ P L SPD F
Sbjct: 25 SGNRHLSSNKKSATSALEERASRPSILVTFLVLAGTILSLYIWPIL-SPDLFF 76
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 27.1 bits (57), Expect = 1.7
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = +1
Query: 406 LWIKTILQDFHTRSLHRCLQQNSSILSS 489
LWIK++ Q++ +++L L ++ + LSS
Sbjct: 475 LWIKSLRQEYESKNLLELLDKHQTALSS 502
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 26.6 bits (56), Expect = 2.3
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Frame = -3
Query: 259 FQSGLNFLEFTSSCSDIEFSRLSKLYFL-----AFTKYTSDNNMNIL 134
F L F EF+++ D E RLSKL + +++ +SD N IL
Sbjct: 1824 FDISLEFNEFSNNEDDSELERLSKLIKVPPLQELYSQMSSDENNQIL 1870
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 26.6 bits (56), Expect = 2.3
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 198 LENSISEHDEVNSKKFNPDWKDLDTRK 278
L N +++H+ + SK + K +DTRK
Sbjct: 1325 LRNKVADHESIRSKLSEVEMKLVDTRK 1351
>SPBC16E9.17c |rem1||meiosis-specific cyclin
Rem1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 50 IGTCINILPRSLVIVIIFINSY*ILKN 130
+ TCIN+LP SL + I ++ + L+N
Sbjct: 185 VHTCINLLPESLFLSINVLDRFLSLQN 211
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 25.8 bits (54), Expect = 4.0
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -1
Query: 432 ILEDSFYP*TMCTSENHLSNYSKTILTHNWERNTHPSVK 316
I++ + Y T+ ++EN+ NYS L+ + + PS+K
Sbjct: 498 IIKPNTYKNTILSNENNTPNYSNVCLSTSLINRSLPSLK 536
>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 336
Score = 25.8 bits (54), Expect = 4.0
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +1
Query: 343 PVMGQNGFGVIGKVVL*STHCLWIKTI 423
P +G NGFG IG++VL + L KTI
Sbjct: 4 PKVGINGFGRIGRIVL--RNALVAKTI 28
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 468 EFFDPQQWAQLFSKAGAK 521
EFFDP++ + FS AGAK
Sbjct: 1175 EFFDPEEPSPEFSFAGAK 1192
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 241 FLEFTSSCSDIEFSRLSKLYFLAF 170
FL F SCSD++F + + AF
Sbjct: 1060 FLLFLKSCSDVDFKPYNVFIYTAF 1083
>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 343 PVMGQNGFGVIGKVVL 390
P +G NGFG IG++VL
Sbjct: 4 PKVGINGFGRIGRIVL 19
>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 485
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +3
Query: 291 YDRAKIGIFLHWGVYSVPSYGSEWFWSN 374
Y R+ + +W VYS S W +SN
Sbjct: 339 YSRSSLPSAENWNVYSKKDIPSRWHYSN 366
>SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 25.0 bits (52), Expect = 6.9
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +3
Query: 30 RAFVFYLLVPVLIFY 74
+ F FYLLVP+ + Y
Sbjct: 114 KVFAFYLLVPIFVVY 128
>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 24.6 bits (51), Expect = 9.1
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +3
Query: 375 WKGGSLKYTLFMDKNYP 425
+KGG K+ + +D NYP
Sbjct: 65 YKGGKFKFRIQIDDNYP 81
>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 677
Score = 24.6 bits (51), Expect = 9.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 207 SISEHDEVNSKKFNPDWKDLDTRKLPEWYDR 299
S ++ E N KK+N + TR++ E YDR
Sbjct: 606 SNTDSRESNHKKYNHFHQKSQTRRVMEQYDR 636
>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 24.6 bits (51), Expect = 9.1
Identities = 15/60 (25%), Positives = 30/60 (50%)
Frame = +3
Query: 192 DNLENSISEHDEVNSKKFNPDWKDLDTRKLPEWYDRAKIGIFLHWGVYSVPSYGSEWFWS 371
D++ +S S H++ + PD ++ D+ + + Y ++I +F SYG FW+
Sbjct: 203 DDMPSSASNHNQKHLDSDKPDNENFDSHIISQLYRISEIFVF---------SYGVVVFWN 253
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,211,406
Number of Sequences: 5004
Number of extensions: 47662
Number of successful extensions: 144
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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