Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_F04
         (525 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0387 - 8016399-8016575,8016661-8016788,8017073-8017214,801...    29   2.3  
11_01_0628 + 5052042-5052863,5053232-5053475,5054136-5054155           28   5.3  
05_04_0085 + 17790417-17790714,17791826-17791869,17793658-177937...    27   7.0  
02_05_0746 - 31451303-31453168,31453243-31453357,31454296-314543...    27   7.0  
12_01_0268 - 1941515-1941534,1941868-1942057,1942155-1942322,194...    27   9.2  
01_06_0112 + 26558618-26558778,26565370-26565580,26565665-265658...    27   9.2  

>03_02_0387 -
           8016399-8016575,8016661-8016788,8017073-8017214,
           8017301-8017396,8017572-8017712,8017857-8018031,
           8018443-8018575,8018661-8018733,8018807-8018900,
           8019890-8019981,8020091-8020185,8020267-8020378
          Length = 485

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = -3

Query: 328 PQCKNIPILALSYHSGNFRVSKSFQSGLNFL-EFTSSCSDIEFSR--LSKLYFLAFTKYT 158
           P   +  + A+SY  GN  V    +S ++FL +  S    +E S   LS + FL   K T
Sbjct: 352 PYLASAAVSAVSYLEGNPSVLADLRSNISFLHKELSGTPGLEISSHVLSPIVFLKLKKST 411

Query: 157 SDNNMNI 137
             +N +I
Sbjct: 412 GSSNTDI 418


>11_01_0628 + 5052042-5052863,5053232-5053475,5054136-5054155
          Length = 361

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = -3

Query: 328 PQCKNIPILAL-SYHSGNFRVSKSFQSGLNFLEFTSSCSDIEFSRLSKLYFLAFTKYTSD 152
           P C  +  L L S H     +S    +  +FL F SSC  +++  + + YF + TK TS 
Sbjct: 130 PYCHELDELPLVSQHLTRLELSGLILND-SFLNF-SSCLALDYLEIVQCYFSSLTKITSQ 187

Query: 151 NNMNILMI 128
           +   + +I
Sbjct: 188 SLKRLRII 195


>05_04_0085 +
           17790417-17790714,17791826-17791869,17793658-17793793,
           17794315-17794391,17794646-17794706,17794707-17794924,
           17795168-17795412,17796032-17796401,17796916-17797344
          Length = 625

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 282 PEWYDRAKIGIFLHWGVYSVPSYGS 356
           PEW +RA+  +  H+G  + P Y S
Sbjct: 453 PEWQERAREEVLHHFGRTTTPDYDS 477


>02_05_0746 -
           31451303-31453168,31453243-31453357,31454296-31454351,
           31455057-31455138,31455484-31455517,31455912-31456016,
           31456108-31456387
          Length = 845

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 497 LSPLLRIEEFCCKHRCK 447
           + PL+R EE C K RCK
Sbjct: 159 IGPLIRYEECCAKMRCK 175


>12_01_0268 -
           1941515-1941534,1941868-1942057,1942155-1942322,
           1943425-1943568,1944284-1944443,1944512-1944621,
           1944900-1945019,1945649-1945766,1946610-1946729,
           1947228-1947285,1947590-1947723,1949332-1949414,
           1949544-1949786,1949851-1949976,1950075-1951562
          Length = 1093

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
 Frame = -3

Query: 334 YTPQCKNIPILALSYHSGNFRVSKSFQSGLNFLEFTSSCSDIEFS-RLSKLYFLAFT-KY 161
           +   C NI  L L Y+ GN R+             T    +IE +  L KL   AF  KY
Sbjct: 402 FVEACPNIRELHLGYYDGNVRIRSDKLEIFQVWCSTMKSVNIEHAPELRKLTIAAFPGKY 461

Query: 160 TSDNNMNIL 134
           +S  ++ ++
Sbjct: 462 SSSLSVRVI 470


>01_06_0112 +
           26558618-26558778,26565370-26565580,26565665-26565826,
           26566650-26566874,26566960-26567073
          Length = 290

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 273 RKLPEWYDRAKIGIFLHWGVYSVPSYGSEWFW 368
           RKL  +      G+ L W VY   +Y   +FW
Sbjct: 222 RKLTIFVRAVDAGVTLFWAVYCAYNYDHSFFW 253


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,105,642
Number of Sequences: 37544
Number of extensions: 264134
Number of successful extensions: 630
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)