Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_F04
         (525 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7747| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)               158   2e-39
SB_31446| Best HMM Match : No HMM Matches (HMM E-Value=.)             151   3e-37
SB_20513| Best HMM Match : No HMM Matches (HMM E-Value=.)             144   3e-35
SB_55050| Best HMM Match : Alpha_L_fucos (HMM E-Value=2.4e-18)        142   2e-34
SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)                140   5e-34
SB_729| Best HMM Match : Alpha_L_fucos (HMM E-Value=1.1e-11)          140   6e-34
SB_31239| Best HMM Match : Alpha_L_fucos (HMM E-Value=2.7e-16)        129   1e-30
SB_20267| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_54400| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_51478| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_41684| Best HMM Match : Ferric_reduct (HMM E-Value=0.00026)         27   9.5  

>SB_7747| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)
          Length = 413

 Score =  158 bits (384), Expect = 2e-39
 Identities = 65/97 (67%), Positives = 76/97 (78%), Gaps = 2/97 (2%)
 Frame = +3

Query: 240 KFNPDWKDLDTRKLPEWYDRAKIGIFLHWGVYSVPSYG--SEWFWSNWKGGSLKYTLFMD 413
           K+ P+W  LDTR LP+WYDRAK GI +HWGVYSVPS+G  +EWFW+ WK GS +Y  FM 
Sbjct: 24  KYQPNWDSLDTRPLPDWYDRAKFGIIMHWGVYSVPSFGVAAEWFWNYWKSGSPQYVDFMK 83

Query: 414 KNYPPGFSYQEFAPMFTAEFFDPQQWAQLFSKAGAKY 524
           +NYPPGFSY +FAPMF AEFFDP  WA L S +GAKY
Sbjct: 84  QNYPPGFSYADFAPMFKAEFFDPDIWASLISMSGAKY 120


>SB_31446| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score =  151 bits (366), Expect = 3e-37
 Identities = 61/96 (63%), Positives = 74/96 (77%), Gaps = 1/96 (1%)
 Frame = +3

Query: 240 KFNPDWKDLDTRKLPEWYDRAKIGIFLHWGVYSVPSYGSEWFWSNWKG-GSLKYTLFMDK 416
           ++N  WK LD R LP WYD+AK GIF+HWGV+SVP +GSEWFW  WKG    +Y  FM K
Sbjct: 10  EYNATWKSLDARPLPAWYDQAKFGIFVHWGVFSVPGFGSEWFWYFWKGLHRPEYVEFMKK 69

Query: 417 NYPPGFSYQEFAPMFTAEFFDPQQWAQLFSKAGAKY 524
           NY PGFSY +F PMF AEF+DP+QWA LF+K+GA+Y
Sbjct: 70  NYRPGFSYPDFGPMFKAEFYDPEQWADLFAKSGARY 105


>SB_20513| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 349

 Score =  144 bits (350), Expect = 3e-35
 Identities = 57/97 (58%), Positives = 69/97 (71%)
 Frame = +3

Query: 234 SKKFNPDWKDLDTRKLPEWYDRAKIGIFLHWGVYSVPSYGSEWFWSNWKGGSLKYTLFMD 413
           S  +NP W  LD R +P WYD+AK GIF+HWGV+SVPS+GSEWFW  W      Y  F++
Sbjct: 35  STHYNPTWNSLDKRPIPAWYDKAKFGIFMHWGVFSVPSFGSEWFWKFWHDKDKPYVDFVN 94

Query: 414 KNYPPGFSYQEFAPMFTAEFFDPQQWAQLFSKAGAKY 524
            NYPP +SY +FAP  TAEFFD  +WA L SK+GAKY
Sbjct: 95  NNYPPRWSYADFAPQLTAEFFDANEWADLLSKSGAKY 131


>SB_55050| Best HMM Match : Alpha_L_fucos (HMM E-Value=2.4e-18)
          Length = 203

 Score =  142 bits (343), Expect = 2e-34
 Identities = 60/104 (57%), Positives = 74/104 (71%), Gaps = 7/104 (6%)
 Frame = +3

Query: 234 SKKFNPDWKDLDTRKLPEWYDRAKIGIFLHWGVYSVPSYGSE-------WFWSNWKGGSL 392
           + K+ P W  LD+R  P WYD+AK GIF+HWGVYSVPS+G+E       WFW  W  G+ 
Sbjct: 22  TSKYLPTWDSLDSRPNPPWYDKAKFGIFMHWGVYSVPSFGAESGGTAGEWFWRYWHDGNP 81

Query: 393 KYTLFMDKNYPPGFSYQEFAPMFTAEFFDPQQWAQLFSKAGAKY 524
            +  FM KNYPPGFSY +FAPMF AEFFDP ++A L +K+GAKY
Sbjct: 82  AFVNFMKKNYPPGFSYADFAPMFKAEFFDPDEFADLVAKSGAKY 125


>SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)
          Length = 1127

 Score =  140 bits (340), Expect = 5e-34
 Identities = 57/96 (59%), Positives = 72/96 (75%), Gaps = 1/96 (1%)
 Frame = +3

Query: 240 KFNPDWKDLDTRKLPEWYDRAKIGIFLHWGVYSVPSYGSEWFWSNWKGGSLKYTL-FMDK 416
           K+ P W  LD+R  P WYD+AK G+F+HWGVYSVPS+GSEWFW++WK       + FM K
Sbjct: 22  KYLPSWDSLDSRPDPPWYDKAKFGVFMHWGVYSVPSFGSEWFWNHWKQQHYPSCIEFMKK 81

Query: 417 NYPPGFSYQEFAPMFTAEFFDPQQWAQLFSKAGAKY 524
           NYP GFSY +F PMF AEFFDP  +A+L +K+GA+Y
Sbjct: 82  NYPSGFSYADFGPMFKAEFFDPNYFAKLVAKSGARY 117


>SB_729| Best HMM Match : Alpha_L_fucos (HMM E-Value=1.1e-11)
          Length = 155

 Score =  140 bits (339), Expect = 6e-34
 Identities = 59/99 (59%), Positives = 71/99 (71%), Gaps = 4/99 (4%)
 Frame = +3

Query: 240 KFNPDWKDLDTRKLPEWYDRAKIGIFLHWGVYSVPSYG----SEWFWSNWKGGSLKYTLF 407
           K+ P W+ LD+R  P WYD+AK GIF+HWG+YSVPSYG    SEWFW  W  GS     F
Sbjct: 22  KYLPTWESLDSRPNPGWYDKAKFGIFMHWGLYSVPSYGDGEASEWFWKYWHDGSSANVNF 81

Query: 408 MDKNYPPGFSYQEFAPMFTAEFFDPQQWAQLFSKAGAKY 524
           M KN+PPGF+Y +F PMF AEFFDP  +A L +K+GAKY
Sbjct: 82  MKKNFPPGFTYADFGPMFKAEFFDPDVFANLIAKSGAKY 120


>SB_31239| Best HMM Match : Alpha_L_fucos (HMM E-Value=2.7e-16)
          Length = 476

 Score =  129 bits (312), Expect = 1e-30
 Identities = 58/125 (46%), Positives = 79/125 (63%), Gaps = 5/125 (4%)
 Frame = +3

Query: 165 LVNAKKYNFDNLENSISEHD---EVNSKKF--NPDWKDLDTRKLPEWYDRAKIGIFLHWG 329
           +VN  K  F ++  S  + D   E+N   +   PDW+ LD R LP WY+ AK GIF+HWG
Sbjct: 98  IVNHPKAMFASVIRSQQKDDSYYELNQIPYYSTPDWESLDARPLPSWYEDAKFGIFVHWG 157

Query: 330 VYSVPSYGSEWFWSNWKGGSLKYTLFMDKNYPPGFSYQEFAPMFTAEFFDPQQWAQLFSK 509
           +YSVP  GSEWFW +W+ G  +   +M +NYPPGFSY +FA    AE F+   W +L +K
Sbjct: 158 LYSVPGVGSEWFWYHWRQGYPEIMEYMWRNYPPGFSYADFASKLKAEMFNATAWHELIAK 217

Query: 510 AGAKY 524
           +GA+Y
Sbjct: 218 SGARY 222


>SB_20267| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 415

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 171 NAKKYNFDNLENSISEHDEVNSKKFNPDWKD 263
           N   YN+DN +N+ +++++ N K  N D  D
Sbjct: 208 NDNNYNYDNNDNNDNDNNDNNDKNDNNDNND 238


>SB_54400| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 723

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -3

Query: 277 FRVSKSFQSGLNFLEFTSSCSDIEFSRLSKLYFLAFTKYTSDNNMNIL 134
           ++ +KS+++  N  + T  CS   F   S  +F++   +TS N    L
Sbjct: 47  YQTTKSYEALQNNSKLTWICSSCLFPNFSTTHFMSSLDFTSFNEFTTL 94


>SB_51478| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 213

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = +3

Query: 147 LLSLVYLVNAK---KYNFDNLENSISEHDEVNSKKFNPDWKDLDTRKLPE 287
           L  L YL   K   KY+ D + + ++ H  V  +  NP W  +  R+ P+
Sbjct: 144 LCRLDYLFGEKGWYKYSIDVVNDKVTCHLSVTKQPKNPYWPTIGIRETPK 193


>SB_41684| Best HMM Match : Ferric_reduct (HMM E-Value=0.00026)
          Length = 177

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 168 VNAKKYNFDNLENSISEHDEVNSKKFNPDWKD 263
           V A  YNF+NL +S S+ +E+++K    D  D
Sbjct: 60  VGAHCYNFENLIDSWSKENEIDAKLSQLDGAD 91


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,405,429
Number of Sequences: 59808
Number of extensions: 305265
Number of successful extensions: 712
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)