Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_F04
         (525 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67738-2|CAA91546.2|  482|Caenorhabditis elegans Hypothetical pr...   119   1e-27
AF078792-2|AAC26946.1|  512|Caenorhabditis elegans Hypothetical ...    30   1.2  
AF003132-1|AAB54133.3|  798|Caenorhabditis elegans Hypothetical ...    29   2.0  
X70833-1|CAA50181.1|  575|Caenorhabditis elegans Cytoplasmic int...    27   6.2  
U29379-3|AAF99979.3|  558|Caenorhabditis elegans Intermediate fi...    27   6.2  

>Z67738-2|CAA91546.2|  482|Caenorhabditis elegans Hypothetical
           protein W03G11.3 protein.
          Length = 482

 Score =  119 bits (287), Expect = 1e-27
 Identities = 49/96 (51%), Positives = 65/96 (67%), Gaps = 2/96 (2%)
 Frame = +3

Query: 243 FNPDWKDLDTRKLPEWYDRAKIGIFLHWGVYSVPSYGSEWFWSNWKGGSLKYTL--FMDK 416
           + PDW+ LD R LP WYD +K GIF HWG+YSVP++ SEW W  WKG      +  F+DK
Sbjct: 18  YTPDWESLDNRPLPSWYDDSKFGIFCHWGLYSVPAFRSEWMWWYWKGTQPDKDVVNFVDK 77

Query: 417 NYPPGFSYQEFAPMFTAEFFDPQQWAQLFSKAGAKY 524
           NY PG +Y +FA  FTAE+F+  Q+A+    +GA+Y
Sbjct: 78  NYKPGTTYADFAKDFTAEYFNANQFAETVKTSGARY 113


>AF078792-2|AAC26946.1|  512|Caenorhabditis elegans Hypothetical
           protein Y40D12A.2 protein.
          Length = 512

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 309 GIFLHWGVYSVPSYGSEWFWSNWKGGSLKYTLFMDKNYPPGFSY 440
           G+F+  G + V +YG E   + W    +   +++D     GFSY
Sbjct: 80  GLFIEMGPFRVRNYGEEVNRNPWTWNRIANIIYLDAPAGVGFSY 123


>AF003132-1|AAB54133.3|  798|Caenorhabditis elegans Hypothetical
           protein F37E3.1 protein.
          Length = 798

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
 Frame = +3

Query: 135 RIFILLSLVYLVNAKKYNF--DNLENSISEHDEVNSKK 242
           R+ +  +LV L+N+K +NF  D +E  ISE  ++ SK+
Sbjct: 82  RVTVYTTLVGLLNSKNFNFGGDVVEKLISEQQDLLSKQ 119


>X70833-1|CAA50181.1|  575|Caenorhabditis elegans Cytoplasmic
           intermediate filament(IF) protein protein.
          Length = 575

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 409 WIKTILQDFHTRSLHRCLQQN 471
           W K  +Q+ HT++   CL+QN
Sbjct: 302 WYKLKVQEIHTQNSRNCLEQN 322


>U29379-3|AAF99979.3|  558|Caenorhabditis elegans Intermediate
           filament, a protein 4 protein.
          Length = 558

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 409 WIKTILQDFHTRSLHRCLQQN 471
           W K  +Q+ HT++   CL+QN
Sbjct: 285 WYKLKVQEIHTQNSRNCLEQN 305


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,905,239
Number of Sequences: 27780
Number of extensions: 251396
Number of successful extensions: 713
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)