Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_F03
         (463 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0514 + 4481383-4481903,4482532-4484590,4485038-4485107,448...    27   5.6  

>08_01_0514 + 4481383-4481903,4482532-4484590,4485038-4485107,
            4485434-4485660,4486238-4486324,4486408-4487114,
            4487206-4487270,4487323-4487837,4487898-4487991,
            4488116-4488398,4488494-4488689,4488913-4489254
          Length = 1721

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = -2

Query: 342  HETIFMSRSTSKYFCIYFYT-HCKIAYCYYCFI 247
            H   F S S SK FC   Y+ H   AYC  CFI
Sbjct: 1105 HRRRFRS-SWSKQFCWLEYSRHTDCAYCLTCFI 1136


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,746,490
Number of Sequences: 37544
Number of extensions: 121683
Number of successful extensions: 212
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)