Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_F03
         (463 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC107139-1|AAI07140.1|  767|Homo sapiens patched domain containi...    30   4.5  
AK126025-1|BAC86399.1|  804|Homo sapiens protein ( Homo sapiens ...    30   4.5  

>BC107139-1|AAI07140.1|  767|Homo sapiens patched domain containing
           3 protein.
          Length = 767

 Score = 29.9 bits (64), Expect = 4.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 330 FMSRSTSKYFCIYFYTHCKIAYCYYCF 250
           F++RS SKYF ++ Y    I+  Y CF
Sbjct: 595 FLTRSESKYFVVFIYVLYIISSIYGCF 621


>AK126025-1|BAC86399.1|  804|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44037 fis, clone TESTI4028823. ).
          Length = 804

 Score = 29.9 bits (64), Expect = 4.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 330 FMSRSTSKYFCIYFYTHCKIAYCYYCF 250
           F++RS SKYF ++ Y    I+  Y CF
Sbjct: 595 FLTRSESKYFVVFIYVLYIISSIYGCF 621


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,039,248
Number of Sequences: 237096
Number of extensions: 799888
Number of successful extensions: 1308
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1308
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3929066862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)