Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_F02
         (587 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    24   0.83 
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    24   0.83 
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    24   0.83 
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   3.3  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    21   7.7  

>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 0.83
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 513 DVLHRHTTAEDGCDGEVAARDAXSHGRRCMFLASNI 406
           DVL  + +A++G DG         HG  C+++   I
Sbjct: 89  DVL-MYNSADEGFDGTFQTNVVVKHGGSCLYVPPGI 123


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 0.83
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 513 DVLHRHTTAEDGCDGEVAARDAXSHGRRCMFLASNI 406
           DVL  + +A++G DG         HG  C+++   I
Sbjct: 89  DVL-MYNSADEGFDGTFQTNVVVKHGGSCLYVPPGI 123


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 0.83
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 513 DVLHRHTTAEDGCDGEVAARDAXSHGRRCMFLASNI 406
           DVL  + +A++G DG         HG  C+++   I
Sbjct: 89  DVL-MYNSADEGFDGTFQTNVVVKHGGSCLYVPPGI 123


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 190 HLWRSQSLSLPHHVWRHHLPQVP 258
           ++W   + ++P HVW H  P +P
Sbjct: 530 NIWNPLTDTIPIHVWIH--PWIP 550


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 171 RSNYLHPPMEISIT 212
           R NY  PP+E+ +T
Sbjct: 57  RPNYGGPPVEVGVT 70


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,321
Number of Sequences: 336
Number of extensions: 2722
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14726181
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)