Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_F01
         (315 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein S12|Schizosa...   101   2e-23
SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein S12|Sch...   100   6e-23
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa...    28   0.38 
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    27   0.51 
SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces pom...    27   0.89 
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa...    25   2.7  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    24   6.3  
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom...    24   6.3  
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    23   8.3  

>SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein
           S12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score =  101 bits (243), Expect = 2e-23
 Identities = 44/69 (63%), Positives = 54/69 (78%)
 Frame = +1

Query: 10  CDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFG 189
           CD+ AY KLV+ALC E Q PLVKV + K LGEWAGLC +D+DG ARK+VGCSCV + D+G
Sbjct: 74  CDQEAYVKLVEALCAESQTPLVKVADPKILGEWAGLCVLDRDGNARKVVGCSCVAVTDYG 133

Query: 190 EETPALDVL 216
           E++ AL  L
Sbjct: 134 EDSVALQTL 142


>SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein
           S12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 145

 Score =  100 bits (239), Expect = 6e-23
 Identities = 42/69 (60%), Positives = 54/69 (78%)
 Frame = +1

Query: 10  CDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFG 189
           CD+ AY KLV+ALC E + PL+KV + K LGEWAGLC +D+DG ARK+VGCSCV + D+G
Sbjct: 71  CDQEAYVKLVEALCAESETPLIKVADPKVLGEWAGLCVLDRDGNARKVVGCSCVAVTDYG 130

Query: 190 EETPALDVL 216
           E++ AL  L
Sbjct: 131 EDSAALQKL 139


>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 738

 Score = 27.9 bits (59), Expect = 0.38
 Identities = 12/36 (33%), Positives = 24/36 (66%)
 Frame = -1

Query: 246 GLT*RLEVVFEYVQRWRLLTEILDNYARATDDFPSL 139
           G++ RLE VF + +  +L+ + +DN+ + T +F +L
Sbjct: 529 GVSSRLEEVFAFAKDQKLVKKSIDNFLQLTVNFENL 564


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 27.5 bits (58), Expect = 0.51
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 142 PCRLCRFYRDRPIRRASYCYRP 77
           PC LC F R +P+R+  +  RP
Sbjct: 441 PCSLCGFNRTQPLRQFEFRSRP 462


>SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 26.6 bits (56), Expect = 0.89
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 198 RLLTEILDNYARATDDFPSLAVFVD 124
           R+L   L NYA+  DD  SL+ F+D
Sbjct: 84  RILAFALLNYAKNIDDLTSLSAFMD 108


>SPBC25B2.04c |||mitochondrial ribosome assembly
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 328

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +2

Query: 71  LLRSITIRSSANGPVSVKSTKTARLGKSSVALA*LSRISVRR 196
           L+R++  ++SANG V V        GKSS+ L  L  +++R+
Sbjct: 132 LIRTLVDQASANGRVYVYFVGMPNTGKSSI-LNSLRNVALRK 172


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 73  VKVDNNKKLGEWAGLCKIDKDGKARKIVG 159
           V+ +N +K  EWAGL  ID +      VG
Sbjct: 527 VRKENKRKAQEWAGL-TIDDEADLLVFVG 554


>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 157 RRFS*PCRLCRFYRDRP 107
           RRF  PCR   +++D P
Sbjct: 15  RRFCGPCRRLHYHKDNP 31


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 173 TTQEQPTIFLALPSLSILQRPA 108
           T    P I    PS+S+ QRPA
Sbjct: 556 TAMPHPNITSPSPSISVTQRPA 577


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,017,071
Number of Sequences: 5004
Number of extensions: 17321
Number of successful extensions: 57
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)