Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_F01
(315 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0875 - 7265529-7265588,7265681-7265746,7266008-7266293,726... 115 7e-27
07_01_0360 + 2646279-2646283,2647113-2647398,2648043-2648108,264... 114 2e-26
02_05_1227 - 35076047-35076217,35076737-35076797,35077038-350771... 29 0.77
12_01_1092 - 11362094-11362367,11362739-11362795,11363256-113636... 28 1.8
12_01_0222 - 1675077-1675289,1675476-1675553,1675943-1676002,167... 28 1.8
11_01_0221 - 1720952-1721164,1721351-1721428,1721836-1721895,172... 28 1.8
08_01_0883 + 8672020-8672193,8672343-8672458,8672604-8672756,867... 27 4.1
02_05_1037 + 33682048-33682188,33682317-33682358,33683143-336833... 26 5.4
05_03_0076 + 8164466-8164511,8164643-8164698,8165529-8165867,816... 26 7.1
06_03_1074 + 27394124-27394247,27395229-27395305,27395469-273956... 25 9.4
06_03_0246 + 18672704-18673111,18674069-18674164,18674362-186745... 25 9.4
04_04_0158 - 23187070-23187264,23187347-23187477,23187550-231877... 25 9.4
03_01_0169 + 1385813-1388359 25 9.4
02_05_0851 + 32215521-32215803,32216371-32217746,32217873-32217938 25 9.4
>07_01_0875 -
7265529-7265588,7265681-7265746,7266008-7266293,
7267138-7267142
Length = 138
Score = 115 bits (277), Expect = 7e-27
Identities = 49/77 (63%), Positives = 62/77 (80%)
Frame = +1
Query: 1 ARGCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIK 180
A CD+ Y KLV+ALC EH + LV V + K LGEWAGLCKID +GKARK+VGCSCVV+K
Sbjct: 60 AEDCDQPDYVKLVKALCAEHNVHLVTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVK 119
Query: 181 DFGEETPALDVLKDYLK 231
DFGEE+ L++++DY+K
Sbjct: 120 DFGEESEGLNIVQDYVK 136
>07_01_0360 +
2646279-2646283,2647113-2647398,2648043-2648108,
2648199-2648258
Length = 138
Score = 114 bits (274), Expect = 2e-26
Identities = 48/77 (62%), Positives = 62/77 (80%)
Frame = +1
Query: 1 ARGCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIK 180
A CD+ Y KLV+ALC EH + LV V + K LGEWAGLCKID +GKARK+VGCSCVV+K
Sbjct: 60 AEDCDQPDYVKLVKALCAEHNVHLVTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVK 119
Query: 181 DFGEETPALDVLKDYLK 231
D+GEE+ L++++DY+K
Sbjct: 120 DYGEESEGLNIVQDYVK 136
>02_05_1227 -
35076047-35076217,35076737-35076797,35077038-35077123,
35077213-35077301,35077685-35077766,35078094-35078136,
35078211-35078284,35078492-35078561,35078747-35078816,
35079275-35079369,35079473-35079549,35080725-35080760
Length = 317
Score = 29.1 bits (62), Expect = 0.77
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -1
Query: 144 SLAVFVDFTETGPFAELLIVIDLNKWDLMFITE 46
S+ F+D ET P A+ L + DL D++F++E
Sbjct: 186 SMIYFIDDVETSPAAQNLALRDLPLRDILFLSE 218
>12_01_1092 -
11362094-11362367,11362739-11362795,11363256-11363683,
11364350-11365462
Length = 623
Score = 27.9 bits (59), Expect = 1.8
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +1
Query: 10 CDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 102
CDE +K + +CN + L + D+N +G
Sbjct: 319 CDEYTVRKCSKVICNRSKNSLYRFDSNASIG 349
>12_01_0222 - 1675077-1675289,1675476-1675553,1675943-1676002,
1676103-1676206,1676321-1676479,1676768-1676894,
1677569-1677736,1677890-1678000,1678090-1678243,
1678409-1678744,1678854-1679038,1679141-1679239,
1679376-1679639,1679776-1679952,1680351-1680644,
1680753-1680920,1681574-1681918,1682002-1682171,
1682272-1682422,1683296-1683365,1683456-1683640,
1683999-1684092,1684195-1684313,1684658-1684717,
1684844-1684930,1685631-1685717,1685905-1686013,
1686105-1686183,1686350-1686437,1686611-1686675,
1687570-1687722,1688514-1688620,1688702-1688784,
1688926-1689016,1689095-1689231,1689612-1689701,
1689795-1689962,1690366-1690560
Length = 1809
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 67 PLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEET 198
PLV K GE A LC+ +K +A+ + ++KDF + T
Sbjct: 1759 PLVDRKGPKFSGELAELCESEKSEQAKAFLKQCMDILKDFEDPT 1802
>11_01_0221 - 1720952-1721164,1721351-1721428,1721836-1721895,
1721996-1722099,1722214-1722372,1722668-1722794,
1723469-1723636,1723789-1723899,1723989-1724142,
1724308-1724643,1724753-1724937,1725040-1725138,
1725275-1725538,1725674-1725850,1726249-1726542,
1726649-1726816,1727473-1727817,1727901-1728070,
1728171-1728321,1729193-1729262,1729353-1729537,
1729896-1729989,1730094-1730212,1730558-1730617,
1730744-1730830,1732348-1732434,1732622-1732730,
1732822-1732900,1733067-1733154,1733328-1733392,
1734287-1734439,1735231-1735337,1735419-1735501,
1735643-1735733,1735812-1735948,1736118-1736207,
1736301-1736468,1736875-1737057
Length = 1805
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 67 PLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEET 198
PLV K GE A LC+ +K +A+ + ++KDF + T
Sbjct: 1755 PLVDRKGPKFSGELAELCESEKSEQAKAFLKQCMDILKDFEDAT 1798
>08_01_0883 +
8672020-8672193,8672343-8672458,8672604-8672756,
8672868-8673195,8673250-8673480,8673567-8673707,
8673805-8674002,8674467-8674754
Length = 542
Score = 26.6 bits (56), Expect = 4.1
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = +2
Query: 29 KSLFRLSVMNIKSHLLR--SITIRSSANGPVSVKSTKTARLGKSSVAL 166
+S F + + + KSH+L + S ++ P+SVKS++ + LG +S L
Sbjct: 76 ESEFDIYLRDDKSHVLYHPEFSSTSVSSSPLSVKSSERSDLGTASAVL 123
>02_05_1037 +
33682048-33682188,33682317-33682358,33683143-33683328,
33684442-33684657,33684803-33684949,33685525-33685866,
33687257-33687361
Length = 392
Score = 26.2 bits (55), Expect = 5.4
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +1
Query: 40 QALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCV 171
QA N ++ P VK D+N W + + K GK I SCV
Sbjct: 137 QASINVYE-PKVKQDSNDLSASWIQIGSVPKVGKGVGIGAGSCV 179
>05_03_0076 + 8164466-8164511,8164643-8164698,8165529-8165867,
8165938-8166012,8166674-8166846,8168697-8168795,
8169002-8169161,8169321-8169464,8169551-8169723,
8169796-8169991,8170061-8170258,8170864-8171016,
8171838-8171959,8172037-8172136,8172221-8172316,
8172400-8172530,8173717-8173819,8174373-8174555,
8174632-8174724,8174818-8174853,8175672-8175773,
8176310-8176472,8176557-8176678,8176994-8177158,
8177667-8177849,8178679-8178831,8179136-8179288,
8179373-8179444,8179530-8179664,8179739-8179800,
8179999-8180096,8180628-8180737,8180832-8181005,
8181092-8181157,8181847-8181915,8181989-8182099,
8182418-8182558,8182638-8182766,8182864-8183029,
8183174-8183388,8184883-8185089,8185501-8185572,
8185897-8186010,8186090-8186281,8186489-8186569,
8186654-8186728,8186812-8186878,8187292-8187452,
8187943-8188116,8188209-8188337,8188421-8188504,
8188589-8188650,8188728-8188800,8189008-8189142,
8189790-8189960,8190054-8190319,8190440-8190458
Length = 2448
Score = 25.8 bits (54), Expect = 7.1
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +2
Query: 95 SSANGPVSVKSTKTARLGKSSVALA*LSRISVRRRQRWTYSKTTSSLQVNP 247
S A+GP+ R+ + ALA +S R++WT S+ ++ L++ P
Sbjct: 1348 SQASGPLQNLDATLGRM-RCLAALARWEDLSALCREQWTGSEPSARLEMAP 1397
>06_03_1074 +
27394124-27394247,27395229-27395305,27395469-27395662,
27395779-27395866,27396316-27396603
Length = 256
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +2
Query: 44 LSVMNIKSHLLRSITIRSSANGPVSVKSTKTARLGKSS 157
+S+ +IKSHL + S++N PVS++ +A + S
Sbjct: 57 VSISHIKSHLQMYRSGSSNSNHPVSLQKLTSATVNNIS 94
>06_03_0246 +
18672704-18673111,18674069-18674164,18674362-18674571,
18675780-18675851,18675898-18675945
Length = 277
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -2
Query: 239 LEDLR*SLSTSNAGVSSPKSLITTQEQP 156
L+D R + ++S+AG + PK+ + QE P
Sbjct: 31 LDDRRPAGTSSSAGETEPKAAVEPQEYP 58
>04_04_0158 -
23187070-23187264,23187347-23187477,23187550-23187763,
23187834-23187932,23188034-23188156,23188247-23188366,
23188447-23188506,23188592-23188884,23189554-23189707,
23189813-23190130,23190668-23190798,23191001-23191586,
23192125-23192739
Length = 1012
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +1
Query: 25 YKKLVQALCNEHQIPLVKVDNNKKLGEWAG-LCKIDKDGKARKIV 156
Y++LV+ +C EH I V+ E G L +++ KA I+
Sbjct: 620 YRELVKIICKEHNIKDVEYAARTLEAESGGILVAVERVSKAHAII 664
>03_01_0169 + 1385813-1388359
Length = 848
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -1
Query: 225 VVFEYVQRWRLLTEILDNYARATDDFPSLAVFVDFTETGP 106
+VF+ RL ++ LD A + P+ A ++D+ T P
Sbjct: 332 IVFDVYVAQRLASKDLDRNAADAAEQPNEAFYLDYAATAP 371
>02_05_0851 + 32215521-32215803,32216371-32217746,32217873-32217938
Length = 574
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = -1
Query: 201 WRLLTEILDNYARATDDFPSLAVFVDFTETGPFAELL 91
W ++T D+Y D+ + + V E GPF +L
Sbjct: 353 WGMVTRYYDSYLARADERLGIQIRVFDPEPGPFQHVL 389
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,499,204
Number of Sequences: 37544
Number of extensions: 109587
Number of successful extensions: 335
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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