Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_F01
         (315 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC095424-1|AAH95424.1|  132|Homo sapiens ribosomal protein S12 p...   124   4e-29
BC071930-1|AAH71930.1|  132|Homo sapiens ribosomal protein S12 p...   124   4e-29
BC017321-1|AAH17321.1|  132|Homo sapiens ribosomal protein S12 p...   124   4e-29
AL137783-3|CAC12946.1|  132|Homo sapiens ribosomal protein S12 p...   124   4e-29
AB061840-1|BAB79478.1|  132|Homo sapiens ribosomal protein S12 p...   124   4e-29
X53505-1|CAA37582.1|  132|Homo sapiens ribosomal protein S12 pro...   118   3e-27

>BC095424-1|AAH95424.1|  132|Homo sapiens ribosomal protein S12
           protein.
          Length = 132

 Score =  124 bits (300), Expect = 4e-29
 Identities = 52/77 (67%), Positives = 65/77 (84%)
 Frame = +1

Query: 1   ARGCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIK 180
           A  CDE  Y KLV+ALC EHQI L+KVD+NKKLGEW GLCKID++GK RK+VGCSCVV+K
Sbjct: 53  ASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVK 112

Query: 181 DFGEETPALDVLKDYLK 231
           D+G+E+ A DV+++Y K
Sbjct: 113 DYGKESQAKDVIEEYFK 129


>BC071930-1|AAH71930.1|  132|Homo sapiens ribosomal protein S12
           protein.
          Length = 132

 Score =  124 bits (300), Expect = 4e-29
 Identities = 52/77 (67%), Positives = 65/77 (84%)
 Frame = +1

Query: 1   ARGCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIK 180
           A  CDE  Y KLV+ALC EHQI L+KVD+NKKLGEW GLCKID++GK RK+VGCSCVV+K
Sbjct: 53  ASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVK 112

Query: 181 DFGEETPALDVLKDYLK 231
           D+G+E+ A DV+++Y K
Sbjct: 113 DYGKESQAKDVIEEYFK 129


>BC017321-1|AAH17321.1|  132|Homo sapiens ribosomal protein S12
           protein.
          Length = 132

 Score =  124 bits (300), Expect = 4e-29
 Identities = 52/77 (67%), Positives = 65/77 (84%)
 Frame = +1

Query: 1   ARGCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIK 180
           A  CDE  Y KLV+ALC EHQI L+KVD+NKKLGEW GLCKID++GK RK+VGCSCVV+K
Sbjct: 53  ASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVK 112

Query: 181 DFGEETPALDVLKDYLK 231
           D+G+E+ A DV+++Y K
Sbjct: 113 DYGKESQAKDVIEEYFK 129


>AL137783-3|CAC12946.1|  132|Homo sapiens ribosomal protein S12
           protein.
          Length = 132

 Score =  124 bits (300), Expect = 4e-29
 Identities = 52/77 (67%), Positives = 65/77 (84%)
 Frame = +1

Query: 1   ARGCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIK 180
           A  CDE  Y KLV+ALC EHQI L+KVD+NKKLGEW GLCKID++GK RK+VGCSCVV+K
Sbjct: 53  ASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVK 112

Query: 181 DFGEETPALDVLKDYLK 231
           D+G+E+ A DV+++Y K
Sbjct: 113 DYGKESQAKDVIEEYFK 129


>AB061840-1|BAB79478.1|  132|Homo sapiens ribosomal protein S12
           protein.
          Length = 132

 Score =  124 bits (300), Expect = 4e-29
 Identities = 52/77 (67%), Positives = 65/77 (84%)
 Frame = +1

Query: 1   ARGCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIK 180
           A  CDE  Y KLV+ALC EHQI L+KVD+NKKLGEW GLCKID++GK RK+VGCSCVV+K
Sbjct: 53  ASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVK 112

Query: 181 DFGEETPALDVLKDYLK 231
           D+G+E+ A DV+++Y K
Sbjct: 113 DYGKESQAKDVIEEYFK 129


>X53505-1|CAA37582.1|  132|Homo sapiens ribosomal protein S12
           protein.
          Length = 132

 Score =  118 bits (285), Expect = 3e-27
 Identities = 50/77 (64%), Positives = 63/77 (81%)
 Frame = +1

Query: 1   ARGCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIK 180
           A  CDE  Y KLV+AL  EHQI L+KVD+NKKLGEW GLCKID++G  RK+VGCSCVV+K
Sbjct: 53  ASNCDEPMYVKLVEALLAEHQINLIKVDDNKKLGEWVGLCKIDREGNPRKVVGCSCVVVK 112

Query: 181 DFGEETPALDVLKDYLK 231
           D+G+E+ A DV+++Y K
Sbjct: 113 DYGKESQAKDVIEEYFK 129


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,540,782
Number of Sequences: 237096
Number of extensions: 584933
Number of successful extensions: 1132
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1132
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1453211950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)