Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_F01
(315 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00067-8|AAK20077.1| 140|Caenorhabditis elegans Ribosomal prote... 97 2e-21
U88311-6|AAB42347.1| 382|Caenorhabditis elegans Hypothetical pr... 29 0.93
L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical pr... 28 1.6
Z81589-2|CAB04724.1| 728|Caenorhabditis elegans Hypothetical pr... 27 2.8
Z82062-4|CAB04888.1| 266|Caenorhabditis elegans Hypothetical pr... 27 3.8
Z69664-11|CAA93518.2| 1479|Caenorhabditis elegans Hypothetical p... 27 3.8
AL022716-7|CAA18775.2| 1479|Caenorhabditis elegans Hypothetical ... 27 3.8
AL021570-1|CAA16510.2| 1479|Caenorhabditis elegans Hypothetical ... 27 3.8
Z68493-1|CAA92789.1| 150|Caenorhabditis elegans Hypothetical pr... 26 5.0
U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical pr... 26 6.6
U55856-5|AAA98023.1| 441|Caenorhabditis elegans Synaptotagmin p... 26 6.6
U55856-4|AAK68354.1| 443|Caenorhabditis elegans Synaptotagmin p... 26 6.6
L15302-1|AAA28145.1| 441|Caenorhabditis elegans synaptotagmin I... 26 6.6
AL031627-4|CAA20957.1| 230|Caenorhabditis elegans Hypothetical ... 26 6.6
Z69884-3|CAA93750.1| 285|Caenorhabditis elegans Hypothetical pr... 25 8.7
U41748-1|AAA83335.3| 696|Caenorhabditis elegans Hypothetical pr... 25 8.7
>U00067-8|AAK20077.1| 140|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 12 protein.
Length = 140
Score = 97.5 bits (232), Expect = 2e-21
Identities = 42/75 (56%), Positives = 53/75 (70%)
Frame = +1
Query: 1 ARGCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIK 180
A CDE Y KLV+ LC EHQIPL+KV + K +GE+ GLCK DK+GKARK+VGCS V+
Sbjct: 61 AENCDEPQYVKLVETLCAEHQIPLIKVADKKIIGEYCGLCKYDKEGKARKVVGCSSAVVT 120
Query: 181 DFGEETPALDVLKDY 225
++G E +L DY
Sbjct: 121 NWGNEEQGRAILTDY 135
>U88311-6|AAB42347.1| 382|Caenorhabditis elegans Hypothetical
protein C10H11.8 protein.
Length = 382
Score = 28.7 bits (61), Expect = 0.93
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 52 NEHQIPLVKVDNNKKLGEWAGLCK 123
N++Q+ + V+NNKK+ +W G K
Sbjct: 345 NDNQVKIWDVENNKKVAQWDGHIK 368
>L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical
protein C06E1.10 protein.
Length = 1148
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 115 LCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKD 222
L K K+ K +K+ + ++DF EETP + +D
Sbjct: 488 LVKGTKEWKEKKVEAAKSIKLEDFKEETPETEDFED 523
>Z81589-2|CAB04724.1| 728|Caenorhabditis elegans Hypothetical
protein T08G5.2 protein.
Length = 728
Score = 27.1 bits (57), Expect = 2.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 213 YVQRWRLLTEILDNYARATDDFPS 142
++Q W L +I+ N+ AT FPS
Sbjct: 563 HIQTWMLNVKIVANFTSATKSFPS 586
>Z82062-4|CAB04888.1| 266|Caenorhabditis elegans Hypothetical
protein W02A11.8 protein.
Length = 266
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 112 GLCKIDKDGKARKIVGCSCVVIKDFGEET 198
G C I+ D K VG + ++DFGEET
Sbjct: 80 GKCTIEADITIIKEVGDARAKLRDFGEET 108
>Z69664-11|CAA93518.2| 1479|Caenorhabditis elegans Hypothetical
protein C24F3.5 protein.
Length = 1479
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/42 (26%), Positives = 25/42 (59%)
Frame = +1
Query: 10 CDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKD 135
CDE K++++ + E + +++++NN+ + W K DK+
Sbjct: 790 CDECE-KEVIEGVTFEKKSRVLQLENNQAVLYWKDTAKADKE 830
>AL022716-7|CAA18775.2| 1479|Caenorhabditis elegans Hypothetical
protein C24F3.5 protein.
Length = 1479
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/42 (26%), Positives = 25/42 (59%)
Frame = +1
Query: 10 CDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKD 135
CDE K++++ + E + +++++NN+ + W K DK+
Sbjct: 790 CDECE-KEVIEGVTFEKKSRVLQLENNQAVLYWKDTAKADKE 830
>AL021570-1|CAA16510.2| 1479|Caenorhabditis elegans Hypothetical
protein C24F3.5 protein.
Length = 1479
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/42 (26%), Positives = 25/42 (59%)
Frame = +1
Query: 10 CDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKD 135
CDE K++++ + E + +++++NN+ + W K DK+
Sbjct: 790 CDECE-KEVIEGVTFEKKSRVLQLENNQAVLYWKDTAKADKE 830
>Z68493-1|CAA92789.1| 150|Caenorhabditis elegans Hypothetical
protein C33A12.1 protein.
Length = 150
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/40 (35%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Frame = +1
Query: 16 EAAYKKLVQALCNEHQIPLVKVDNN-KKLGEWAGLCKIDK 132
+AAY+K +A+ + ++ LV+ +N+ KKL E G+ +I++
Sbjct: 75 DAAYRKYTEAVVKQ-RLALVQAENDIKKLEEKIGMGQIEE 113
>U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical protein
B0207.5 protein.
Length = 3279
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 14 TRQPTKSLFRLSVMNIKSHLLRSITIRSSANGPVSVKSTKTARLG 148
T P ++ ++++ + RS IR N P VK TKT +G
Sbjct: 1569 TNPPDENCSKVNIDELTDKEYRSY-IRRCPNNPTGVKITKTVEVG 1612
>U55856-5|AAA98023.1| 441|Caenorhabditis elegans Synaptotagmin
protein 1, isoform a protein.
Length = 441
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 64 IPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIK 180
IPL K+D + EW + D +A K +G C ++
Sbjct: 263 IPLGKIDLGAVIEEWKDIAPPPDDKEAEKSLGDICFSLR 301
>U55856-4|AAK68354.1| 443|Caenorhabditis elegans Synaptotagmin
protein 1, isoform b protein.
Length = 443
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 64 IPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIK 180
IPL K+D + EW + D +A K +G C ++
Sbjct: 263 IPLGKIDLGAVIEEWKDIAPPPDDKEAEKSLGDICFSLR 301
>L15302-1|AAA28145.1| 441|Caenorhabditis elegans synaptotagmin I
protein.
Length = 441
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 64 IPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIK 180
IPL K+D + EW + D +A K +G C ++
Sbjct: 263 IPLGKIDLGAVIEEWKDIAPPPDDKEAEKSLGDICFSLR 301
>AL031627-4|CAA20957.1| 230|Caenorhabditis elegans Hypothetical
protein Y102A5C.13 protein.
Length = 230
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +1
Query: 112 GLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVL 216
G+CK K+ ++GC V++K+ + +LD++
Sbjct: 11 GVCKSKKNTHLDSLLGCLSVLMKNSELQLDSLDII 45
>Z69884-3|CAA93750.1| 285|Caenorhabditis elegans Hypothetical
protein F31F6.3 protein.
Length = 285
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -1
Query: 51 TESLNKLFVGCLV 13
TE+LNKLF GC V
Sbjct: 160 TETLNKLFAGCSV 172
>U41748-1|AAA83335.3| 696|Caenorhabditis elegans Hypothetical
protein C31H2.1a protein.
Length = 696
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 95 SSANGPVSVKSTKTARLGKSSV 160
SS GP+ ++T+ R+G+SSV
Sbjct: 166 SSPEGPLFTENTRDTRIGESSV 187
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,552,808
Number of Sequences: 27780
Number of extensions: 97190
Number of successful extensions: 338
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 355337994
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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