Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_F01
         (315 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   0.50 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.2  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   3.5  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    20   8.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    20   8.1  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.8 bits (49), Expect = 0.50
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +1

Query: 31  KLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARK--IVGCSCV 171
           KL+  +  E    L +VD  + LGE   L   D   K +K  + GC CV
Sbjct: 564 KLIDNIKKEIYDILPEVDVEEILGEAKVLQNFDIKDKNKKVNVAGCRCV 612


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 98  SANGPVSVKSTKTARLGKSSVALA*LSRISVRRRQ 202
           S+NG + V STK   +  S  +   LS  SV+ R+
Sbjct: 815 SSNGDIKVPSTKVLAMISSVKSFMELSLRSVKDRE 849


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = -2

Query: 170 TQEQPTIFLALPSL 129
           T++Q T+F+A+P +
Sbjct: 67  TEQQSTVFVAIPRI 80


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 66  DLMFITESLNKLFVGCLV 13
           +L   + ++  LFVGCLV
Sbjct: 61  NLFLASLAIADLFVGCLV 78


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 5/18 (27%), Positives = 11/18 (61%)
 Frame = -1

Query: 72  KWDLMFITESLNKLFVGC 19
           +WDL+ +    N+++  C
Sbjct: 196 EWDLLGVPGKRNEIYYNC 213


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,900
Number of Sequences: 438
Number of extensions: 1183
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6719922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)